SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene2723

Length: 1414 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene2723

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2266	27/28

Source	Descriptions	Term	Type	Identity
AutoFact	UDP-D-glucuronate 4-epimerase 1 [Arabidopsis thaliana] ref\|XP_002867348.1\| UDP-D-glucuronate 4-epimerase 1 [Arabidopsis lyrata subsp. lyrata] sp\|Q9M0B6.1\|GAE1_ARATH RecName: Full=UDP-glucuronate 4-epimerase 1; AltName: Full=UDP-glucuronic acid epimerase 1	-	-	78%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	72%
Blast2go	protein	-	-	91%

Source	ECs	Term	Type	e value	Identity
Blast2go	UDP-glucuronate 5'-epimerase.	EC:5.1.3.12	-	0.0	91%

Source	KEGGs	Term	Type	Identity
Blast2go	Amino sugar and nucleotide sugar metabolism	00520		91%
Blast2go	Metabolic pathways	01100		91%
Blast2go	UDP-glucuronate 4-epimerase.	EC:5.1.3.6	-	91%

Source	KEGGs	Term	Identity
Blast2go	Starch and sucrose metabolism	00500	91%
Blast2go	Amino sugar and nucleotide sugar metabolism	00520	91%
Blast2go	Metabolic pathways	01100	91%

Source	GOs	Term	Type	Identity
Blast2go	carbohydrate metabolic process	GO:0005975	Biological Process	91%
Blast2go	nucleotide-sugar metabolic process	GO:0009225	Biological Process	91%
Blast2go	UDP-glucuronate 5'-epimerase activity	GO:0050379	Molecular Function	91%
Blast2go	UDP-glucuronate 4-epimerase activity	GO:0050378	Molecular Function	91%
Blast2go	coenzyme binding	GO:0050662	Molecular Function	91%

Source	InterPros	Term	Type	Identity
Sma3	NAD-dependent epimerase/dehydratase	IPR001509	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3	Nucleotide sugar epimerase	IPR008089	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LKW2

Fln msg: Overlapping hits, possible frame ERROR between 1163 and 1130, and overlapping frame ERROR between 1252 and 1132,

Fln protein: MPPPLSSLQDNFPSTPGKVKIERGYHFNRQLNRWLTSSATLFFWALFLIALTASYVCFKASLDRGPKHMSSTWGGAQWEKKVRHSCQAKSRDGLVVLVTGAAGFVGTHVSLALKKRGDGVLGLDNFNDYYDTSLKRARETLLKKHGVFVIEGDINDSTLLNKLFDVIPFTHVMHLAAQAGVRYAMENPSSYVHSNIAGLVTLLEACKAANPQPAIVWASSSSVYGLNDKVPFSEIDRTDQPASLYAATKKAGEEITHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITIYKGHNQVDLARDFTYIDDIVKGCVASLDTAGKSTGSGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxMPGNGDVPFTHANVTRARLELGYKPSTDLQTGLKKFVKWYQNYYGYSYSKI*

Protein Length: 434

Fln nts: TTTCAATCACCACTATTACATCCTGGCAAAACCATTTTGGACCGACTCTTCATTTCAGTCAAGACAGGATCAACCCAATCCAGTAAGGCCTTTCAGTGAGCCCATCTGTTGCA_-_ATGCCTCCGCCATTATCATCATTACAAGACAATTTTCCTTCAACTCCCGGCAAAGTGAAGATAGAGAGGGGGTACCATTTTAATCGCCAGTTGAACCGATGGCTTACTTCATCGGCGACATTGTTCTTTTGGGCTCTCTTTCTGATTGCATTGACTGCATCCTACGTGTGTTTTAAGGCCTCTTTGGACAGAGGCCCCAAGCATATGTCGTCGACCTGGGGTGGCGCTCAATGGGAAAAAAAAGTAAGACATTCTTGCCAAGCAAAGAGTCGGGATGGTTTGGTGGTGTTGGTCACTGGTGCTGCTGGGTTTGTGGGAACACATGTCTCTCTGGCTTTGAAGAAAAGAGGAGATGGAGTCCTTGGACTGGATAACTTTAATGATTATTATGATACATCTCTTAAAAGAGCTCGGGAAACCCTGCTGAAGAAGCACGGGGTGTTTGTTATAGAAGGAGACATAAATGATAGTACGTTGTTAAATAAACTATTTGATGTTATTCCGTTCACCCATGTTATGCATTTAGCAGCCCAGGCTGGTGTTAGATATGCTATGGAAAATCCATCTTCCTATGTTCATAGCAACATTGCAGGTCTTGTCACCTTGCTAGAAGCCTGTAAAGCAGCCAATCCTCAACCAGCTATTGTGTGGGCTTCTTCTAGTTCAGTCTACGGCCTAAATGATAAGGTGCCCTTTTCTGAGATAGATAGAACTGATCAACCTGCCAGTCTCTATGCCGCTACAAAGAAAGCAGGGGAGGAAATCACTCACACATACAATCATATATATGGACTCTCTATCACAGGTTTGAGATTTTTCACTGTATATGGACCATGGGGACGGCCTGACATGGCTTATTTCTCCTTCACAAGGAATATTTTGCAAGGCAAACCAATAACTATATACAAAGGACATAACCAGGTGGATCTTGCCAGGGACTTCACATATATAGATGACATTGTCAAGGGGTGTGTTGCTTCTCTTGACACTGCAGGCAAGAGTACAGGAAGTGGAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTATGCCAGGGAATGGCGATGTGCCATTCACTCATGCCAATGTCACTCGTGCAAGATTGGAACTGGGCTACAAACCATCTACAGATCTACAAACGGGTTTAAAGAAGTTTGTAAAATGGTATCAGAATTATTATGGGTATTCTTATAGTAAAATATGA___AGCC

Fln Alignment:

Contig2723___DNFPSTPGKVKIERG-YHFNRQLNRWLTSSATLFFWALFLIALTASYVCFKASLDRGPKHMSST-WGGAQWEKKVRHSCQAKSRDGLVVLVTGAAGFVGTHVSLALKKRGDGVLGLDNFNDYYDTSLKRARETLLKKHGVFVIEGDINDSTLLNKLFDVIPFTHVMHLAAQAGVRYAMENPSSYVHSNIAGLVTLLEACKAANPQPAIVWASSSSVYGLNDKVPFSEIDRTDQPASLYAATKKAGEEITHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITIYKGHNQVDLARDFTYIDDIVKGCVASLDTAGKSTGSGGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxDMPGNGDVPFTHANVTRARLELGYKPSTDLQTGLKKFVKWYQNYYG
B8LKW2_________________DAFPSTPGKVKMERSNIYFGRGSTRWQSSVAKLFFWTVVVVGLIVIFFMRSSSPVETRRLLSTPHWGGHDWEKRVRYSCRVKTEKGIVVLVTGAAGFVGSHVSLALKRRGDGVLGLDNFNDYYDQSLKRARQGLLDKQGVFVVEGDINDAPLLKKLFDVVPFTHVMHLAAQAGVRYAMQNPNSYVHSNIAGLVTIFEICKSANPQPAIVWASSSSVYGLNSKVPFSESDRTDQPASLYAATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFFFTKDILQGKSIDVYQGLNKVDVARDFTYIDDIAKGCVAALDTAKKSTGSGGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxSMPSNGDVPFTHANVSLAHTELGYQPTTDLQTGLKKFVKWYLSYYG

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
670	14			85	0.993533
733	42	57			1.0
997		40		60	1.0
998	40			60	1.0
1061	20	80			0.995493
1063		80		20	0.995493
1064	80		20		0.995493
1094	25			75	0.996473
1095		25	75		0.996473
1096	25	75			0.996473
1205	20			80	0.995493
1293	33			66	1.0
1297			66	33	1.0
1402	33			66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain