SustainPineDB

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Assembly info
Unigenes
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SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene2653

Length: 433 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene2653
AATGTAACTCCTCTCATGGCATAGTCAAAGGTGGAAGGGATTTGTTATGCAGAGTTTCCTTTCTTACAGCAATTGCAAGTGCTCTGTTCACAAATGACACCTGTTGTGTGGTGTTGACAGAATTTGTGCTGAAGCTGTGCAGGCAGAATAATCTGCCTCCTCAGCCCTTCTTATTGGCTCTGGCAACCAGTGCAAACATTGGGTCTGCAGCAACTCCAATTGGCAATCCCCAGAATTTGGTAATTGCAGTACAGAGCAAAATTTCCTTTGGTAAATTCGTGCTGGGAATTTTGCCTTCCATGCTGGTTGGGGTTGCTGTGAATACTTTAATATTGTTAATCATCAACTGGAAGCTGCTCTCTGCAGAGAAAGACGAAGAAGAAGCAGTTGATGTGGCGGCAAGCGAAGAGGACATCAACTCGCATAGAACATT

Ace file of the UniGene biog3_v1.0_unigene2653 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene11853	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Transporter, putative n=1 Tax=Medicago truncatula RepID=Q1RU51_MEDTR	-	-	71%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	77%
Blast2go	transporter arsb-like	-	-	87%

Source	GOs	Term	Type	Identity
Blast2go	arsenite transport	GO:0015700	Biological Process	87%
Blast2go	transmembrane transport	GO:0055085	Biological Process	87%
Blast2go	citrate transport	GO:0015746	Biological Process	87%
Blast2go	arsenite transmembrane transporter activity	GO:0015105	Molecular Function	87%
Blast2go	citrate transmembrane transporter activity	GO:0015137	Molecular Function	87%
Blast2go	endomembrane system	GO:0012505	Cellular Component	87%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	87%
Blast2go	integral to membrane	GO:0016021	Cellular Component	87%

Source	InterPros	Term	Type	e value	Identity
Sma3	Arsenical pump membrane protein, ArsB	IPR000802	-	0.0	-
Sma3	Divalent ion symporter	IPR004680	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9IDB0

Fln msg: Distance to subject end: 190 aas, your sequence is shorter than subject: 143 - 422

Fln protein: CNSSHGIVKGGRDLLCRVSFLTAIASALFTNDTCCVVLTEFVLKLCRQNNLPPQPFLLALATSANIGSAATPIGNPQNLVIAVQSKISFGKFVLGILPSMLVGVAVNTLILLIINWKLLSAEKDEEEAVDVAASEEDINSHRT

Protein Length: 144

Fln nts: AATGTAACTCCTCTCATGGCATAGTCAAAGGTGGAAGGGATTTGTTATGCAGAGTTTCCTTTCTTACAGCAATTGCAAGTGCTCTGTTCACAAATGACACCTGTTGTGTGGTGTTGACAGAATTTGTGCTGAAGCTGTGCAGGCAGAATAATCTGCCTCCTCAGCCCTTCTTATTGGCTCTGGCAACCAGTGCAAACATTGGGTCTGCAGCAACTCCAATTGGCAATCCCCAGAATTTGGTAATTGCAGTACAGAGCAAAATTTCCTTTGGTAAATTCGTGCTGGGAATTTTGCCTTCCATGCTGGTTGGGGTTGCTGTGAATACTTTAATATTGTTAATCATCAACTGGAAGCTGCTCTCTGCAGAGAAAGACGAAGAAGAAGCAGTTGATGTGGCGGCAAGCGAAGAGGACATCAACTCGCATAGAACATT

Fln Alignment:

Contig2653___KGGRDLLCRVSFLTAIASALFTNDTCCVVLTEFVLKLCRQNNLPPQPFLLALATSANIGSAATPIGNPQNLVIAVQSKISFGKFVLGILPSMLVGVAVNTLILLIINWKLL
B9IDB0_________________KGAKDLLCRISVISAISSALFTNDTSCVVLTEFILKITRQHNLPPHPFLLALASSANIGSSATPIGNPQNLVIAVQSKIAFGSFVFGILPAMLVGVVVNILILMCMYWKLL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain