SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene2651

Length: 380 nt

UniGene Fasta

>biog3_v1.0_unigene2651
AATGTGGGAATGGTTTTACGACATGCTCTCACATCAAATACCAAGGAAGCACTGGAGAAGGCTTACAGCTGGCAATATATTAATTGCCTTGAACTTTGGGTTAAATTTCTTTGTGCCAATGCCAGCAATATTGACTTCCAGCCTCTTTCCTATCCGATGGCTCAGATTGTAATTGGAGTTGCTCGTTTGGTGCCTACTGCATGCTATGCCCCTTTGAAGCTGCGATGTACGAAAATGTTAAACACACTTGCTTCTGCTAGAGGAATTTTTATTCCTGTGGCTTCTTTACTTTTTGATATGCTAGAGTGTAAAGAACTGGACAGGACACCAACTGGAGGATATGGGAAAGCTTTTGACTTTTCAACGGCATTGAAGGTACC

Ace file of the UniGene biog3_v1.0_unigene2651

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene552	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	Noc2p family protein [Arabidopsis thaliana] dbj\|BAE98878.1\| hypothetical protein [Arabidopsis thaliana] gb\|AEE79394.1\| Noc2p family protein [Arabidopsis thaliana]	-	-	43%
FL-Next	sp=Nucleolar complex protein 2 homolog; Arabidopsis thaliana (Mouse-ear cress).	-	-	59%
Blast2go	nucleolar complex protein 2 homolog	-	-	69%

Source	GOs	Term	Type	e value	Identity
Blast2go	metal ion binding	GO:0046872	Molecular Function	0.0	69%
Blast2go	oxidoreductase activity	GO:0016491	Molecular Function	0.0	69%

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, GATA-type	IPR000679	-	-
Sma3	Plant peroxidase	IPR000823	-	-
Sma3	Lipase, GDSL	IPR001087	-	-
Sma3	Haem peroxidase, plant/fungal/bacterial	IPR002016	-	-
Sma3	Uncharacterised protein family UPF0120	IPR005343	-	-
Sma3	Zinc finger, NHR/GATA-type	IPR013088	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-
Sma3	Peroxidase, active site	IPR019794	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9ZPV5

Fln msg: Distance to subject end: 273 aas, your sequence is shorter than subject: 126 - 779

Fln protein: NVGMVLRHALTSNTKEALEKAYSWQYINCLELWVKFLCANASNIDFQPLSYPMAQIVIGVARLVPTACYAPLKLRCTKMLNTLASARGIFIPVASLLFDMLECKELDRTPTGGYGKAFDFSTALKV

Protein Length: 127

Fln nts: AATGTGGGAATGGTTTTACGACATGCTCTCACATCAAATACCAAGGAAGCACTGGAGAAGGCTTACAGCTGGCAATATATTAATTGCCTTGAACTTTGGGTTAAATTTCTTTGTGCCAATGCCAGCAATATTGACTTCCAGCCTCTTTCCTATCCGATGGCTCAGATTGTAATTGGAGTTGCTCGTTTGGTGCCTACTGCATGCTATGCCCCTTTGAAGCTGCGATGTACGAAAATGTTAAACACACTTGCTTCTGCTAGAGGAATTTTTATTCCTGTGGCTTCTTTACTTTTTGATATGCTAGAGTGTAAAGAACTGGACAGGACACCAACTGGAGGATATGGGAAAGCTTTTGACTTTTCAACGGCATTGAAGGTACC

Fln Alignment:

Contig2651___VGMVLRHALTSNTKEALEKAYSWQYINCLELWVKFLCANASNIDFQPLSYPMAQIVIGVARLVPTACYAPLKLRCTKMLNTLASARGIFIPVASLLFDMLECKELDRTPTGGYGKAFDFSTALKV
Q9ZPV5_________________LAMILREALNTKTKEAFRKVYQWKFIHCLELWTGAVCAYSSQSELRPVAYPLAQIITGVARLVPTARYTPLRLRCVRMLNRLAAATGTFIPVSMLLVDMLEMKELNRPPTGGVGKGVDLRTLLKV

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
135	25	75			0.996473
136	25			75	0.996473
138		75	25		0.996473
139		75		25	0.996473

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain