SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene2611

Length: 371 nt

UniGene Fasta

>biog3_v1.0_unigene2611
AATGTAGGAGCAAAAGTTATCATTGCAAATCGCAATTATGAAAGAGCGAAGAGCTTGGCAAATTCAGTTGGAGGAGAGGCTATCCCTGTGGAGCAATTAAATAGTTTCCATCCAGAAACAGGGGCAGTCCTTGCGAACACTTCTGCTGTTGGAATGCAGCCAAATGTAAATGCAATGCCTCTGTCAAAGGAAGCTTTGGGGGCATACAGTCTTGTTTTTGATGCAGTTTACACGCCACGAGAGACAAGACTATTGCGAGAGGCCAAAGAGGCTGGGAAAATAGTTGTAAGTGGATTGGAGATGTTCATAAGGCAGGCCATTGGCCAATATGAGCTACATTGGCAAACCAGCACCTACAGAACTCATACATT

Ace file of the UniGene biog3_v1.0_unigene2611

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3526	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	3-dehydroquinate dehydratase/shikimate 5-dehydrogenase (Fragment) n=1 Tax=Juglans regia RepID=A7XEE1_9ROSI	-	-	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	dehydroquinate dehydratase shikimate dehydrogenase	-	-	75%

Source	ECs	Term	Type	e value	Identity
Blast2go		EC:4.2.1.1-	-	0.0	75%
Blast2go	Shikimate dehydrogenase.	EC:1.1.1.25	-	0.0	75%

Source	KEGGs	Term	Identity
Blast2go	Phenylalanine, tyrosine and tryptophan biosynthesis	00400	75%
Blast2go	Biosynthesis of phenylpropanoids	01061	75%
Blast2go	Biosynthesis of alkaloids derived from shikimate pathway	01063	75%
Blast2go	Biosynthesis of plant hormones	01070	75%
Blast2go	Metabolic pathways	01100	75%
Blast2go	Biosynthesis of secondary metabolites	01110	75%

Source	GOs	Term	Type	Identity
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	75%
Blast2go	shikimate metabolic process	GO:0019632	Biological Process	75%
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	75%
Blast2go	aromatic amino acid family biosynthetic process	GO:0009073	Biological Process	75%
Blast2go	3-dehydroquinate dehydratase activity	GO:0003855	Molecular Function	75%
Blast2go	shikimate 3-dehydrogenase (NADP+) activity	GO:0004764	Molecular Function	75%
Blast2go	NADP binding	GO:0050661	Molecular Function	75%
Blast2go	cytosol	GO:0005829	Cellular Component	75%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	75%

Source	InterPros	Term	Type	Identity
Sma3	Aldolase-type TIM barrel	IPR013785	-	-
Sma3	Dehydroquinase class I	IPR001381	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3	Shikimate dehydrogenase	IPR011342	-	-
Sma3	Shikimate dehydrogenase substrate binding, N-terminal	IPR013708	-	-
Sma3	Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase	IPR006151	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NUR4

Fln msg: STOP codon was not found. Distance to subject end: 7 aas, your sequence is shorter than subject: 123 - 514

Fln protein: NVGAKVIIANRNYERAKSLANSVGGEAIPVEQLNSFHPETGAVLANTSAVGMQPNVNAMPLSKEALGAYSLVFDAVYTPRETRLLREAKEAGKIVVSGLEMFIRQAIGQYELHWQTSTYRTHT

Protein Length: 124

Fln nts: AATGTAGGAGCAAAAGTTATCATTGCAAATCGCAATTATGAAAGAGCGAAGAGCTTGGCAAATTCAGTTGGAGGAGAGGCTATCCCTGTGGAGCAATTAAATAGTTTCCATCCAGAAACAGGGGCAGTCCTTGCGAACACTTCTGCTGTTGGAATGCAGCCAAATGTAAATGCAATGCCTCTGTCAAAGGAAGCTTTGGGGGCATACAGTCTTGTTTTTGATGCAGTTTACACGCCACGAGAGACAAGACTATTGCGAGAGGCCAAAGAGGCTGGGAAAATAGTTGTAAGTGGATTGGAGATGTTCATAAGGCAGGCCATTGGCCAATATGAGCTACATTGGCAAACCAGCACCTACAGAACTCATACATT

Fln Alignment:

Contig2611___GAKVIIANRNYERAKSLANSVGGEAIPVEQLNSFHPETGAVLANTSAVGMQPNVNAMPLSKEALGAYSLVFDAVYTPRETRLLREAKEAGKIVVSGLEMFIRQAIGQYEL
A9NUR4_________________GAHVIIANRNYERAKSLANSVGGEAIAVEQLNSFRPETGAVLANTSAVGMQPNVNATPLSKEALGAYTLVFDAVYTPRETRLLREAKEAGKIVVSGLEMFIRQAIGQYEL

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
220	20			80	0.995493
221		20	80		0.995493
224			80	20	0.995493
339	66			33	0.997452
342		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain