SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene2588

Length: 1092 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene2588 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15172	55/55

Source	Descriptions	Term	Type	Identity
AutoFact	Proteasome subunit alpha type n=1 Tax=Picea sitchensis RepID=A9NP38_PICSI	-	-	99%
FL-Next	sp=Proteasome subunit alpha type; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	proteasome subunit alpha	-	-	93%

Source	GOs	Term	Type	Identity
Blast2go	copper ion transport	GO:0006825	Biological Process	93%
Blast2go	peptidase activity	GO:0008233	Molecular Function	93%
Blast2go	copper ion transmembrane transporter activity	GO:0005375	Molecular Function	93%
Blast2go	proteasome complex	GO:0000502	Cellular Component	93%
Blast2go	chloroplast thylakoid membrane	GO:0009535	Cellular Component	93%
Blast2go	cytosolic ribosome	GO:0022626	Cellular Component	93%

Source	InterPros	Term	Type	e value	Identity
Sma3	Proteasome, subunit alpha/beta	IPR001353	-	0.0	-
Sma3	Proteasome, alpha-subunit, N-terminal domain	IPR000426	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NP38

Fln msg:

Fln protein: MSRGTGAGYDRHITIFSPEGRLYQVEYAFKAVKAAGITSIGVRGKDSICVVTQKKCQTSLLDQTSVTHLFPITKFIGLLATGMTADARSLVQHARNEAAEFRFKWGYEMPVDVLARRLADKSQVYTQHAYMRPLGVAAIVLGIDEESGPQLFKCDPAGHFVGYKATAAGVKESEAVSFLEKKLKNNPELSYEETVQTAVSALQSVLQEDFKATEIEVGVVTKESPVFRTLSTEEIDEHLTAISERD*

Protein Length: 248

Fln nts: GACATTCTAATGTGCTTTAACTTTGGCGTAGGGAAGAAGAAAACAAAAGCCCTTGCTCTCGACACTGCATTTTTCCTGCACTTAGGGTTTGAGATCTGAACTACGAGGATTTACCTGATATTTTCAGA_-_ATGAGTCGCGGTACCGGAGCTGGATACGATCGTCACATCACAATATTTTCACCAGAAGGTCGACTGTACCAAGTCGAATATGCTTTCAAAGCAGTGAAGGCCGCGGGAATCACATCCATAGGTGTGCGCGGGAAGGATTCGATTTGCGTCGTTACACAGAAAAAGTGCCAGACAAGTTTACTTGATCAGACTAGTGTGACCCATCTTTTTCCAATTACAAAATTCATTGGGTTATTAGCAACTGGCATGACTGCTGATGCAAGGTCATTAGTTCAGCATGCACGGAATGAGGCAGCAGAGTTCCGTTTCAAATGGGGTTATGAAATGCCTGTAGACGTGCTAGCTAGAAGGCTTGCAGATAAGTCTCAAGTTTATACACAACATGCATACATGAGACCACTTGGAGTAGCTGCTATAGTACTTGGTATTGATGAAGAGTCTGGACCTCAACTATTCAAATGTGATCCGGCTGGTCATTTTGTTGGTTATAAGGCAACTGCTGCTGGTGTCAAGGAGTCAGAGGCAGTCAGTTTTCTGGAGAAGAAATTGAAGAATAATCCAGAGTTATCTTATGAGGAAACTGTACAGACAGCAGTCTCTGCACTCCAATCTGTTCTTCAGGAGGATTTTAAGGCTACAGAAATTGAGGTCGGTGTTGTTACAAAAGAAAGTCCAGTATTTCGTACTTTATCAACAGAAGAGATTGATGAACATCTGACAGCGATCAGTGAGCGGGACTAA___ATATCTGAAGTTGAGAAAAGTTCTCTAAATCTGCAGTTCCTTTTTATTGTTGATTCTGCTAGTGCAGCAGAAGAAAATCTCTGAATGAAGAGAGAATGTTAATGAAATGCCAGTCCCATGAGTTTGGGTATATTCTATGGGTTTACATCTGGAATGGTTGGTGCAATTATTATTTGAACGCTTGAAAACATGAATTTTAGAATGCATAAAGTTTCAAAACATT

Fln Alignment:

Contig2588___MSRGTGAGYDRHITIFSPEGRLYQVEYAFKAVKAAGITSIGVRGKDSICVVTQKKCQTSLLDQTSVTHLFPITKFIGLLATGMTADARSLVQHARNEAAEFRFKWGYEMPVDVLARRLADKSQVYTQHAYMRPLGVAAIVLGIDEESGPQLFKCDPAGHFVGYKATAAGVKESEAVSFLEKKLKNNPELSYEETVQTAVSALQSVLQEDFKATEIEVGVVTKESPVFRTLSTEEIDEHLTAISERD
A9NP38_________________MSRGTGAGYDRHITIFSPEGRLYQVEYAFKAVKAAGITSIGVRGKDSICVVTQKKVPDKLLDQTSVTHLFPITKFIGLLATGMTADARSLVQHARNEAAEFRFKWGYEMPVDVLARRLADKSQVYTQHAYMRPLGVAAIVLGIDEESGPQLFKCDPAGHFVGYKATAAGVKESEAVSFLEKKLKNNPELSYEETVQTAVSALQSVLQEDFKATEIEVGVVTKDSPVFRTLSTDEIDEHLTAISERD

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
58	25			75	0.996473
62	75			25	0.996473
133	20			80	0.995493
134	20	80			0.995493
136			20	80	0.995493
137		80		20	0.995493
213	80	20			0.995493
214	20	80			0.995493
931	20		80		0.995493
933		80		20	0.995493
935	16			16	0.988813
938		83	16		0.994512
939			83	16	0.994512
1057		33		66	0.997452
1059		33		66	0.997452
1060			33	66	0.997452
1062	33	66			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain