SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene2586

Length: 1155 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene2586 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3041	31/31

Source	Descriptions	Term	Type	Identity
AutoFact	ferredoxin-dependent glutamate synthase [Glycine max]	-	-	86%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	ferredoxin-dependent glutamate synthase	-	-	92%

Source	ECs	Term	Type	e value	Identity
Blast2go	Glutamate synthase (ferredoxin).	EC:1.4.7.1	-	0.0	92%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Nitrogen metabolism	00910		0.0	92%

Source	GOs	Term	Type	Identity
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	92%
Blast2go	response to light stimulus	GO:0009416	Biological Process	92%
Blast2go	glutamine metabolic process	GO:0006541	Biological Process	92%
Blast2go	glutamate biosynthetic process	GO:0006537	Biological Process	92%
Blast2go	photorespiration	GO:0009853	Biological Process	92%
Blast2go	positive regulation of glycine hydroxymethyltransferase activity	GO:0080114	Biological Process	92%
Blast2go	glutamate synthase (ferredoxin) activity	GO:0016041	Molecular Function	92%
Blast2go	metal ion binding	GO:0046872	Molecular Function	92%
Blast2go	3 iron, 4 sulfur cluster binding	GO:0051538	Molecular Function	92%
Blast2go	protein binding	GO:0005515	Molecular Function	92%
Blast2go	mitochondrion	GO:0005739	Cellular Component	92%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	92%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	92%
Blast2go	membrane	GO:0016020	Cellular Component	92%
Blast2go	apoplast	GO:0048046	Cellular Component	92%

Source	InterPros	Term	Type	Identity
Sma3	Glutamine amidotransferase, class-II	IPR000583	-	-
Sma3		IPR000759	-	-
Sma3	Pyridine nucleotide-disulphide oxidoreductase, NAD-binding domain	IPR001327	-	-
Sma3	Glutamate synthase, alpha subunit, C-terminal	IPR002489	-	-
Sma3	Glutamate synthase, central-C	IPR002932	-	-
Sma3	Glutamate synthase, NADH/NADPH, small subunit 1	IPR006005	-	-
Sma3	Glutamate synthase, central-N	IPR006982	-	-
Sma3	Glutamate synthase, eukaryotic	IPR012220	-	-
Sma3	Fumarate reductase, C-terminal	IPR012285	-	-
Sma3	FAD-dependent pyridine nucleotide-disulphide oxidoreductase	IPR013027	-	-
Sma3	Aldolase-type TIM barrel	IPR013785	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3	Glutamine amidotransferase, type II	IPR017932	-	-
Sma3	Rhodopsin, retinal binding site	IPR018229	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NSR4

Fln msg: your sequence is longer than subject: 313 - 202

Fln protein: MKTQQLDLSYLLSNVGRPKWSSTKIRQQNVHTNGPVLDDILLADPQISDAIEKEREVKKTVQIYNVDRSVCGRIAGVIAKKYGDTGYAGRLEILFTGSAGQSFGCFLTPGMNIRLVGEANDYVAKGMAGGEIVITPSDKTGFVPEDATIVGNTCLYGATGGRLFVRGKAGERFAVRNSLAEAIVEGTGDHCCEYMTGGCVVVLGKVGRNVAAGMTGGLAYLLDEDDTLIPKVNKEIVKIQRVVAPVGQLQLKQLIEAHVDKTGSTKGTAVLKEWEKYLPLFWQLVPPSEEDSPEANPEFGDRTVERITVKSA*

Protein Length: 314

Fln nts: GAACAGATTTGCTAAGACCAAGGCACATATCTCTC_-_ATGAAGACTCAGCAACTGGATCTCAGTTATCTCCTTTCTAATGTTGGACGACCAAAATGGAGCAGCACAAAGATACGACAACAAAACGTTCATACAAATGGGCCTGTTCTAGATGACATTTTGTTGGCGGATCCTCAGATTTCAGATGCAATAGAGAAGGAAAGGGAAGTGAAGAAAACTGTTCAAATATACAATGTAGACCGTTCAGTCTGTGGTCGAATTGCTGGTGTCATTGCTAAAAAATATGGAGATACAGGTTATGCAGGACGACTGGAGATACTATTTACTGGCAGTGCAGGGCAGTCCTTTGGATGTTTTTTGACACCTGGCATGAATATTCGGCTTGTAGGAGAGGCAAATGATTATGTTGCCAAGGGCATGGCTGGTGGAGAAATTGTCATAACTCCAAGTGACAAAACGGGTTTTGTACCTGAGGATGCAACTATAGTTGGGAATACTTGCTTATATGGTGCAACAGGTGGTCGACTCTTTGTCCGAGGAAAAGCAGGTGAGCGTTTCGCGGTACGAAATTCTCTCGCTGAAGCCATTGTTGAAGGGACTGGTGATCATTGCTGCGAGTACATGACTGGTGGTTGTGTAGTTGTCCTTGGAAAAGTGGGTCGCAATGTTGCTGCTGGTATGACTGGTGGACTAGCATACCTTCTTGATGAAGATGATACTCTGATTCCAAAGGTAAACAAAGAGATAGTAAAGATCCAAAGAGTAGTGGCTCCTGTTGGTCAACTACAACTAAAACAACTAATAGAGGCTCACGTGGACAAGACTGGAAGTACCAAGGGCACTGCAGTTCTGAAAGAATGGGAAAAATATTTACCTTTGTTTTGGCAACTTGTACCGCCCAGTGAAGAAGACTCCCCTGAAGCCAATCCTGAGTTTGGAGACCGAACTGTTGAAAGGATTACTGTGAAGTCTGCTTAA___ACTGAAGATACTATCAATGCTGATATATTGCTATTATCAGCAAGTAATCATTTGTTGCCATAGTGTGAGCGAAAAAAATTGTCGCTCTTTTGTAATTATTCTGTACATCCTCTAGACCTGGAGACCATCGTCAGAATACTCTGCCATCAAGGTTTTAGATGCAAGGAAGAAAGACTACATT

Fln Alignment:

Contig2586___MNIRLVGEANDYVAKGMAGGEIVITPSDKTGFVPEDATIVGNTCLYGATGGRLFVRGKAGERFAVRNSLAEAIVEGTGDHCCEYMTGGCVVVLGKVGRNVAAGMTGGLAYLLDEDDTLIPKVNKEIVKIQRVVAPVGQLQLKQLIEAHVDKTGSTKGTAVLKEWEKYLPLFWQLVPPSEEDSPEANPEFGDRTVERITVKSA
A9NSR4_________________MNIRLLGEANDYVAKGMAGGEIVITPSEKTGFVPEDATIVGNTCLYGATGGRLFVRGKAGERFAVRNSLAEAVVEGTGDHCCEYMTGGCVVVLGKVGRNVAAGMTGGLAYLLDEDDTLVPKVNKEIVKIQRVVAPVGQLQLKQLIEAHVNKTGSTKGTAVLKEWEKYLPLFWQLVPPSEEDTPEANAEFGDRTVERITVKSA

SNPs (tot: 30)

Position	A %	C %	G %	T %	Probability
172	25		75		0.996473
174	75		25		0.996473
237	14			85	0.993533
240	12		75	12	0.975346
241	12	87			0.992554
243			12	87	0.992554
244		87		12	0.992554
373	16		83		0.994512
671	12	87			0.992554
676		87		12	0.992554
731	12			87	0.992554
732		12		87	0.992554
733	12	87			0.992554
735		87		12	0.992554
741			85	14	0.993533
742		85		14	0.993533
760	83			16	0.994512
768	20		80		0.995493
770	20	80			0.995493
855	33	66			0.997452
856	33		66		0.997452
858		66	33		0.997452
924	20			80	0.995493
925	20	80			0.995493
927	80		20		0.995493
928		80		20	0.995493
1069	16			83	0.994512
1070		16		83	0.994512
1071	16		83		0.994512
1072			83	16	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain