SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene2572

Length: 406 nt

UniGene Fasta

>biog3_v1.0_unigene2572
AGAAGGTCAAAGTGATGAGCTAGCAGATTATTGGAAAATGCCAACAGCGCTGATAGATGAAGATGATGATTTCTGGGGATTTGATGAATCAGAAACTGAAATTGCTACTACAAATGGAGCCATTTAATAGAGAAACCTCCTCAGAACAACTGTAATTTTAACTTGTTTCCTAACTAACCAGAAATTGCTGGTCTAACACTGAAATTTGTATCTAACTCATTAAAGGTATAGAATGCGGCTTGCAGAACTATTTGTTTGGGAGGTCAGGAGTTACCTTACAAGATTATCTTCATCCATTCAGAGACACAGAATGTGGGTATATGTCAGTAACTTCTTCCTCTCTCGTAAATATAGTGTTGACACAAGGAGCAACATTATTTTGATATTTCAGCGATATGCATATATC

Ace file of the UniGene biog3_v1.0_unigene2572

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2143	5/5

Source	Descriptions	Term	Type	Identity
AutoFact	protein kinase-like protein [Arabidopsis thaliana] gb\|AAC09037.1\| putative protein kinase [Arabidopsis thaliana] gb\|AAT99800.1\| At2g18890 [Arabidopsis thaliana] gb\|AAU94416.1\| At2g18890 [Arabidopsis thaliana] gb\|AEC06821.1\| protein kinase-like protein [Ar	-	-	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	76%
Blast2go	probable receptor-like serine threonine-protein kinase at5g57670-like	-	-	79%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	0.0	79%

Source	GOs	Term	Type	Identity
Blast2go	response to stress	GO:0006950	Biological Process	79%
Blast2go	protein phosphorylation	GO:0006468	Biological Process	79%
Blast2go	receptor activity	GO:0004872	Molecular Function	79%
Blast2go	ATP binding	GO:0005524	Molecular Function	79%
Blast2go	protein serine/threonine kinase activity	GO:0004674	Molecular Function	79%

Source	InterPros	Term	Type	Identity
Sma3	IQ motif, EF-hand binding site	IPR000048	-	-
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Tubulin	IPR000217	-	-
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Nucleoside diphosphate kinase	IPR001564	-	-
Sma3	Myosin head, motor domain	IPR001609	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Beta tubulin	IPR002453	-	-
Sma3	Dilute	IPR002710	-	-
Sma3	Tubulin/FtsZ, GTPase domain	IPR003008	-	-
Sma3	Pistil-specific extensin-like protein	IPR003882	-	-
Sma3	Myosin, N-terminal, SH3-like	IPR004009	-	-
Sma3	UspA	IPR006016	-	-
Sma3	Tyrosine-protein kinase, active site	IPR008266	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Rossmann-like alpha/beta/alpha sandwich fold	IPR014729	-	-
Sma3	SKG6/AXL2 alpha-helix transmembrane domain	IPR014805	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	Homeobox, conserved site	IPR017970	-	-
Sma3	Peptidase S1/S6, chymotrypsin/Hap, active site	IPR018114	-	-
Sma3	Dil domain	IPR018444	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A9D1

Fln msg: your sequence is shorter than subject: 42 - 347

Fln protein: EGQSDELADYWKMPTALIDEDDDFWGFDESETEIATTNGAI*

Protein Length: 43

Fln nts: AGAAGGTCAAAGTGATGAGCTAGCAGATTATTGGAAAATGCCAACAGCGCTGATAGATGAAGATGATGATTTCTGGGGATTTGATGAATCAGAAACTGAAATTGCTACTACAAATGGAGCCATTTAA___TAGAGAAACCTCCTCAGAACAACTGTAATTTTAACTTGTTTCCTAACTAACCAGAAATTGCTGGTCTAACACTGAAATTTGTATCTAACTCATTAAAGGTATAGAATGCGGCTTGCAGAACTATTTGTTTGGGAGGTCAGGAGTTACCTTACAAGATTATCTTCATCCATTCAGAGACACAGAATGTGGGTATATGTCAGTAACTTCTTCCTCTCTCGTAAATATAGTGTTGACACAAGGAGCAACATTATTTTGATATTTCAGCGATATGCATATATC

Fln Alignment:

Contig2572___EGQSDELADYWKMPTALIDEDDD-FWGFDESETEIATTNGAI
D5A9D1_________________EGQSDELADCWKMSISLINEDDDDFWGFEESESGIAATNGAI

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
49	25		75		0.996473
50	25	75			0.996473
145	20		80		0.995493
146	80			20	0.995493
147	80		20		0.995493
148		80		20	0.995493
284		33	66		0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain