SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene2477

Length: 2033 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene2477
TAACATGCAGTTGTGGCTAAGGATACCACTAGTTAGTCCTGAAATTGAAGATTCAGAGCACACCCCTGATAGCAGTGACACATTTTTGAAAAGTGTCTGTATGTAGGAAACGGCAAAACAACGATTCATGGGAGTGGTGGAATACATTTCGTTTATCATGCGAGCATCACAGTCAGTTGTCCATAGCCCTGGATATACTGAGTTCATTACCTTCTGCAAATTCAGTGGGCCGTTGGAGTGGAGAGCCCGTGAGAGCAGCTATTGTCCACACCAATGCCTTTTTAACCAATGCACGTGGATATCCTTGCCTATCAAAGCGCCACCAAAAACTAGTTACCACTTGTTTCAATTACTCTATACAGATAGTGATCTCTGGAGCACCCCTGCATCAAGTTTCTGGAAGGAGTGTTGAAAGCCCCAAAGAGAACAATAATCATGCCATTGGTGAAGATGGTCAAATACCAAAGACCCACTTGAAGCCATATTTGGACTACGTTGGATATCTATACCAACGTTTAGAGCCTCTCTCTGATCAGGAACGGTTCGAGCTTGGCTACAGGGACTTTTTACAAGCTCCATTGCAGCCTCTTATGGATAATCTGGAGGCTCAAACTTATGAAACATTTGAGAAAGATACTGTGAAGTATGCTCAGTATAAGAAAGCAGTTCATGCAGCCTTACTTGATCGTGTACCTGAGGAGAAAGCATCAACAACAATTACTGTACTTATGGTTGTAGGAGCTGGGCGGGGACCTCTAGTGAGGGCTTCATTGCAGGCTGCAGAAGAATCAGGAAAAATTAAGAGTTTATGCTGTAGAGAAAAACCCCAATGCAGTAGTTACACTCCATAGCTTGATAAAACTGGAGGGTTGGGAAGGCATTGTGACTGTTGTGTCTAGTGACATGCGACAGTGGGTTGCACCAGAAAAAGCTGATATTCTGGTAAGCGAGCTGCTTGGTTCATTTGGTGACAATGAACTTTCTCCTGAGTGCTTAGATGGGGCACAACGATTTTTAAAAGAAGATGGCATTTCCATTCCATCATCGTACACAAGTTTTGTTGAACCAATTACAGCATCAAAACTTTACAATGATGTCAAATCTCATAAAGACATCGCACATTTTGAAACAGCTTATGTTGTAAAACTTCACAGTATAGCGAGACTAGCTCCAACACAACCTGTTTTCACATTCACGCATCCTAACTTCTCTCCCAAAAGAGACAATCGCCGGTATAAGAAGCTGCTTTTTAAGCTTCCTGCAGATACTGGATCAGCACTAGTCCATGGTTTTGCTGGATACTTTGATGCTACACTATATAAAGATATTCATCTTGGTATTGAACCTTCTACAGCAACACCTAACATGTTTAGCTGGTTTGCAATTTTCTTCCCACTTCGTAAACCCATTTATTTGCCAGCTGGTTCAGTCTTGGATGTCCATTTCTGGCGTTGCATAGGTGCTACCAAGGTTTGGTATGAATGGTCTGTCACCTCTCCGTCAGTTTCACCTATTCACAATTGTGGCGGCAGATCATATTGGGTTGGTTTATAATTAGAATGGTGTGGATATACACCATTTTCTTTTGTATTTTTAACACTTCATTTAATTTGTTACAATTGTCATGTAAACTGAGAGATTGAAGCAAAGCAAGTGAAAGCCACTTTCTGTTCTCAACCTTGTATCTGTCTTCCTCGGCTGGATAGATATTATTTTAATTTCTTTATTGAAATTTATGCCCTATTATCATATCATCTGGTTATGGGGGCAGCAAGCTTGTAGTTATATGTTAAATCTCAATGGCTGGAGTTCTATGGTAGACAATAATTGAAATTTTGAAGGTCAAATGAGAAGACGGACCTTTTTGCTCAAATTCCAGTCTAGATGGCCACATTTCTACTACAAACTAACTTGACACTGTCAGTGCTGCGTGATCTGTAGCTTTAGTTGGATTGAGCAGATTTTCAGAATGTTCAACCAGTGTTGAAGTAGGATGTGGCTGGATTTCCACTTGGACATGAAGCTTTCACATT

Ace file of the UniGene biog3_v1.0_unigene2477 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene509	36/38

Source	Descriptions	Term	Type	Identity
AutoFact	RecName: Full=Protein arginine N-methyltransferase 5; AltName: Full=Shk1 kinase-binding protein 1 homolog	-	-	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	protein arginine n-methyltransferase	-	-	81%

Source	ECs	Term	Type	e value	Identity
Blast2go	Histone-arginine N-methyltransferase.	EC:2.1.1.125	-	0.0	81%

Source	GOs	Term	Type	Identity
Blast2go	regulation of flower development	GO:0009909	Biological Process	81%
Blast2go	histone arginine methylation	GO:0034969	Biological Process	81%
Blast2go	phosphorylation	GO:0016310	Biological Process	81%
Blast2go	positive regulation of vernalization response	GO:0010220	Biological Process	81%
Blast2go	histone-arginine N-methyltransferase activity	GO:0008469	Molecular Function	81%
Blast2go	kinase activity	GO:0016301	Molecular Function	81%
Blast2go	cytoplasm	GO:0005737	Cellular Component	81%

Source	InterPros	Term	Type	e value	Identity
Sma3	Skb1 methyltransferase	IPR007857	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A8K7

Fln msg:

Fln protein: MRQWVAPEKADILVSELLGSFGDNELSPECLDGAQRFLKEDGISIPSSYTSFVEPITASKLYNDVKSHKDIAHFETAYVVKLHSIARLAPTQPVFTFTHPNFSPKRDNRRYKKLLFKLPADTGSALVHGFAGYFDATLYKDIHLGIEPSTATPNMFSWFAIFFPLRKPIYLPAGSVLDVHFWRCIGATKVWYEWSVTSPSVSPIHNCGGRSYWVGL*

Protein Length: 218

Fln nts: TAACATGCAGTTGTGGCTAAGGATACCACTAGTTAGTCCTGAAATTGAAGATTCAGAGCACACCCCTGATAGCAGTGACACATTTTTGAAAAGTGTCTGTATGTAGGAAACGGCAAAACAACGATTCATGGGAGTGGTGGAATACATTTCGTTTATCATGCGAGCATCACAGTCAGTTGTCCATAGCCCTGGATATACTGAGTTCATTACCTTCTGCAAATTCAGTGGGCCGTTGGAGTGGAGAGCCCGTGAGAGCAGCTATTGTCCACACCAATGCCTTTTTAACCAATGCACGTGGATATCCTTGCCTATCAAAGCGCCACCAAAAACTAGTTACCACTTGTTTCAATTACTCTATACAGATAGTGATCTCTGGAGCACCCCTGCATCAAGTTTCTGGAAGGAGTGTTGAAAGCCCCAAAGAGAACAATAATCATGCCATTGGTGAAGATGGTCAAATACCAAAGACCCACTTGAAGCCATATTTGGACTACGTTGGATATCTATACCAACGTTTAGAGCCTCTCTCTGATCAGGAACGGTTCGAGCTTGGCTACAGGGACTTTTTACAAGCTCCATTGCAGCCTCTTATGGATAATCTGGAGGCTCAAACTTATGAAACATTTGAGAAAGATACTGTGAAGTATGCTCAGTATAAGAAAGCAGTTCATGCAGCCTTACTTGATCGTGTACCTGAGGAGAAAGCATCAACAACAATTACTGTACTTATGGTTGTAGGAGCTGGGCGGGGACCTCTAGTGAGGGCTTCATTGCAGGCTGCAGAAGAATCAGGAAAAATTAAGAGTTTATGCTGTAGAGAAAAACCCCAATGCAGTAGTTACACTCCATAGCTTGATAAAACTGGAGGGTTGGGAAGGCATTGTGACTGTTGTGTCTAGTGAC_-_ATGCGACAGTGGGTTGCACCAGAAAAAGCTGATATTCTGGTAAGCGAGCTGCTTGGTTCATTTGGTGACAATGAACTTTCTCCTGAGTGCTTAGATGGGGCACAACGATTTTTAAAAGAAGATGGCATTTCCATTCCATCATCGTACACAAGTTTTGTTGAACCAATTACAGCATCAAAACTTTACAATGATGTCAAATCTCATAAAGACATCGCACATTTTGAAACAGCTTATGTTGTAAAACTTCACAGTATAGCGAGACTAGCTCCAACACAACCTGTTTTCACATTCACGCATCCTAACTTCTCTCCCAAAAGAGACAATCGCCGGTATAAGAAGCTGCTTTTTAAGCTTCCTGCAGATACTGGATCAGCACTAGTCCATGGTTTTGCTGGATACTTTGATGCTACACTATATAAAGATATTCATCTTGGTATTGAACCTTCTACAGCAACACCTAACATGTTTAGCTGGTTTGCAATTTTCTTCCCACTTCGTAAACCCATTTATTTGCCAGCTGGTTCAGTCTTGGATGTCCATTTCTGGCGTTGCATAGGTGCTACCAAGGTTTGGTATGAATGGTCTGTCACCTCTCCGTCAGTTTCACCTATTCACAATTGTGGCGGCAGATCATATTGGGTTGGTTTATAA___TTAGAATGGTGTGGATATACACCATTTTCTTTTGTATTTTTAACACTTCATTTAATTTGTTACAATTGTCATGTAAACTGAGAGATTGAAGCAAAGCAAGTGAAAGCCACTTTCTGTTCTCAACCTTGTATCTGTCTTCCTCGGCTGGATAGATATTATTTTAATTTCTTTATTGAAATTTATGCCCTATTATCATATCATCTGGTTATGGGGGCAGCAAGCTTGTAGTTATATGTTAAATCTCAATGGCTGGAGTTCTATGGTAGACAATAATTGAAATTTTGAAGGTCAAATGAGAAGACGGACCTTTTTGCTCAAATTCCAGTCTAGATGGCCACATTTCTACTACAAACTAACTTGACACTGTCAGTGCTGCGTGATCTGTAGCTTTAGTTGGATTGAGCAGATTTTCAGAATGTTCAACCAGTGTTGAAGTAGGATGTGGCTGGATTTCCACTTGGACATGAAGCTTTCACATT

Fln Alignment:

Contig2477___MRQWVAPEKADILVSELLGSFGDNELSPECLDGAQRFLKEDGISIPSSYTSFVEPITASKLYNDVKSHKDIAHFETAYVVKLHSIARLAPTQPVFTFTHPNFSPKRDNRRYKKLLFKLPADTGSALVHGFAGYFDATLYKDIHLGIEPSTATPNMFSWFAIFFPLRKPIYLPAGSVLDVHFWRCIGATKVWYEWSVTSPSVSPIHNCGGRSYWVGL
D5A8K7_________________MRQWVAPEKADILVSELLGSFGDNELSPECLDGAQRFLKEDGISIPSSYTSFIEPITASKLHNDVKSHKDIAHFETAYVVKLHSIARLAPPQPVFTFTHPNFSPKRDNRRYKKLLFELPADTGSALVHGFAGYFDATLYKDIHLGIEPSTATPNMFSWFAIFFPLRKPIYLPAGSVLDVHFWRCVGATKVWYEWSVTSPSVSPIHNCGGRSYWVGL

SNPs (tot: 29)

Position	A %	C %	G %	T %	Probability
373	33		66		0.997452
374	33	66			0.997452
376			33	66	0.997452
450	85			14	0.993533
491		88	11		0.923564
492		88		11	0.923564
607	10		90		0.90298
608	90	10			0.90298
610		90		10	0.90298
611		88		11	0.923564
788	33		66		0.997452
789		75		25	0.996473
790	75		25		0.996473
791			75	25	0.996473
853	16		83		0.994512
854			83	16	0.994512
855			16	83	0.994512
918	14		85		0.993533
938	11	88			0.923564
942		88		11	0.923564
1003	85	14			0.993533
1006			85	14	0.993533
1007	16	83			0.994512
1048	50		50		1.0
1253	33			66	1.0
1254	33	66			1.0
1257		66		33	1.0
1392	83			16	0.994512
1412	80	20			0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain