SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene2435

Length: 426 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene2435
AATGTCCCCAGGGTCTGTGTTGATTGCAAGACCACCAAGACACCTCTCTGGAGAAGTGGTCCACAAGGTCCCAAGTCATTGTGCAATGCGTGCGGGATACGATACAGAAAGGCCAGGCGAGCCCTCTCTGCATTTGGGAACAACGATCACATTGCAGCAGAAGCTTGTAATTCCACATCCCCCAAAAGGAAGCTGGCTGATAATCGAGAGGAAAGGGCAGAAAAGTTTAATGTGCATTTCAAGAAACGAAGCAAACTGTCAATCCCATCGTTGCAAAAGTTCTCTGCCAGCCCTATTCATCTGGAAACTAACAGTTCCCATTCTGCATTCCAAAGGGTTTTTGCACAGGATGAGGAGGAAGCAGCAGTGTTGCTGATGGCTCTATCGTGTGGACTTGTTCATGTCTAAATGTGATCATAGCGTATT

Ace file of the UniGene biog3_v1.0_unigene2435 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8840	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	GATA transcription factor 21 [Arabidopsis thaliana] sp\|Q5HZ36.2\|GAT21_ARATH RecName: Full=GATA transcription factor 21 dbj\|BAA97205.1\| unnamed protein product [Arabidopsis thaliana] gb\|ABG25059.1\| At5g56860 [Arabidopsis thaliana] gb\|AED96815.1\| GATA trans	-	-	5.0e-24	42%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	94%
Blast2go	gata transcription factor 22-like	-	-	0.0	57%

Source	GOs	Term	Type	Identity
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	57%
Blast2go	cellular response to organic substance	GO:0071310	Biological Process	57%
Blast2go	negative regulation of post-embryonic development	GO:0048581	Biological Process	57%
Blast2go	signal transduction	GO:0007165	Biological Process	57%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	57%
Blast2go	sequence-specific DNA binding	GO:0043565	Molecular Function	57%
Blast2go	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	57%

Source	InterPros	Term	Type	e value	Identity
Sma3	Zinc finger, GATA-type	IPR000679	-	0.0	-
Sma3	Zinc finger, NHR/GATA-type	IPR013088	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LRB8

Fln msg: your sequence is shorter than subject: 136 - 380

Fln protein: NVPRVCVDCKTTKTPLWRSGPQGPKSLCNACGIRYRKARRALSAFGNNDHIAAEACNSTSPKRKLADNREERAEKFNVHFKKRSKLSIPSLQKFSASPIHLETNSSHSAFQRVFAQDEEEAAVLLMALSCGLVHV*

Protein Length: 137

Fln nts: AATGTCCCCAGGGTCTGTGTTGATTGCAAGACCACCAAGACACCTCTCTGGAGAAGTGGTCCACAAGGTCCCAAGTCATTGTGCAATGCGTGCGGGATACGATACAGAAAGGCCAGGCGAGCCCTCTCTGCATTTGGGAACAACGATCACATTGCAGCAGAAGCTTGTAATTCCACATCCCCCAAAAGGAAGCTGGCTGATAATCGAGAGGAAAGGGCAGAAAAGTTTAATGTGCATTTCAAGAAACGAAGCAAACTGTCAATCCCATCGTTGCAAAAGTTCTCTGCCAGCCCTATTCATCTGGAAACTAACAGTTCCCATTCTGCATTCCAAAGGGTTTTTGCACAGGATGAGGAGGAAGCAGCAGTGTTGCTGATGGCTCTATCGTGTGGACTTGTTCATGTCTAA___ATGTGATCATAGCGTATT

Fln Alignment:

Contig2435___NVPRVCVDCKTTKTPLWRSGPQGPKSLCNACGIRYRKARRALSAFGNNDHIAAEACNSTSPKRKLADNREERAEKFNVHFKKRSKLSIPSLQKFSASPIHLETNSSHSAFQRVFAQDEEEAAVLLMALSCGLVHV
B8LRB8_________________NVPRVCVDCKTTKTPLWRSGPQGPKSLCNACGIRYRKARRALSAFGNSDHIAAEACNSTSPKRKLVDNREKRAEKFNVHFKKRSRLSIPSLKKFVPSPIHLETNSSHSAFQRVFAQDEEEAAVLLMALSCGLVHV

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
312		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain