SustainPineDB

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Assembly info
Unigenes
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SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene2401

Length: 353 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene2401
AATGTCGAGAAATTACTGAAGGAAGCGAAGAAGCTACCATGGGAAGACCGGCTTTCTCACAAGAACTGGAAGGTTCGAAATGATGCCAATATTGACCTTGCGTCTCTCTTGGAAACCATTAAAGATCCTAAAGATCCCCGCCTTAGAGAATTCGGTTTGTTTTTCAGAAAAACAGTAGCAGATTCAAATGCACCAGTGCAAGAGAAAGCACTTGATGCATTGATTGCGTACTTGAGAGCAGCTGATGCAGATGCTGGGAGGTTTGCAAAAGAAATATGTGATGCTGTTGTAGCAAAGTGTCTTACAGGTCGTGCAAAGACAATAGAAAAGGCACAAACTGTGTTTTTGACATT

Ace file of the UniGene biog3_v1.0_unigene2401 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9182	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	microtubule bundling polypeptide TMBP200 [Nicotiana tabacum]	-	-	79%
FL-Next	sp=Protein MOR1; Arabidopsis thaliana (Mouse-ear cress).	-	-	78%
Blast2go	microtubule organization protein	-	-	88%

Source	GOs	Term	Type	Identity
Blast2go	microtubule cytoskeleton organization	GO:0000226	Biological Process	88%
Blast2go	intracellular protein transport	GO:0006886	Biological Process	88%
Blast2go	cell plate formation involved in plant-type cell wall biogenesis	GO:0009920	Biological Process	88%
Blast2go	microtubule binding	GO:0008017	Molecular Function	88%
Blast2go	microtubule	GO:0005874	Cellular Component	88%
Blast2go	preprophase band	GO:0009574	Cellular Component	88%
Blast2go	spindle	GO:0005819	Cellular Component	88%
Blast2go	cortical microtubule cytoskeleton	GO:0030981	Cellular Component	88%
Blast2go	phragmoplast	GO:0009524	Cellular Component	88%

Source	InterPros	Term	Type	Identity
Sma3	HEAT	IPR000357	-	-
Sma3	VHS	IPR002014	-	-
Sma3	Armadillo-like helical	IPR011989	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: sp_plants

Fln subject: Q94FN2

Fln msg: Distance to subject end: 1857 aas, atg_distance in limit (1-15): atg_distance = 4, W2: There is no M at the beginning, your sequence is shorter than subject: 117 - 1978

Fln protein: NVEKLLKEAKKLPWEDRLSHKNWKVRNDANIDLASLLETIKDPKDPRLREFGLFFRKTVADSNAPVQEKALDALIAYLRAADADAGRFAKEICDAVVAKCLTGRAKTIEKAQTVFLT

Protein Length: 118

Fln nts: A_-_ATGTCGAGAAATTACTGAAGGAAGCGAAGAAGCTACCATGGGAAGACCGGCTTTCTCACAAGAACTGGAAGGTTCGAAATGATGCCAATATTGACCTTGCGTCTCTCTTGGAAACCATTAAAGATCCTAAAGATCCCCGCCTTAGAGAATTCGGTTTGTTTTTCAGAAAAACAGTAGCAGATTCAAATGCACCAGTGCAAGAGAAAGCACTTGATGCATTGATTGCGTACTTGAGAGCAGCTGATGCAGATGCTGGGAGGTTTGCAAAAGAAATATGTGATGCTGTTGTAGCAAAGTGTCTTACAGGTCGTGCAAAGACAATAGAAAAGGCACAAACTGTGTTTTTGACATT

Fln Alignment:

Contig2401___EKLLKEAKKLPWEDRLSHKNWKVRNDANIDLASLLETIKDPKDPRLREFGLFFRKTVADSNAPVQEKALDALIAYLRAADADAGRFAKEICDAVVAKCLTGRAKTIEKAQTVFL
Q94FN2_________________EKLLKEAKKLPWEDRLGHKNWKVRNEANVDLASVFDSITDPKDPRLRDFGHLFRKTVADSNAPVQEKALDALIAFLRAADSDAGRYAKEVCDAIALKCLTGRKNTVDKAQAAFL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain