SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene2384

Length: 400 nt

UniGene Fasta

>biog3_v1.0_unigene2384
AATGTAATAAATCCAGAGTCCCTTAAGAAGTATGGTGAGGCAGCTGAAAAATGTCTTGCCGAGCAAGGGGTTGAAAGGCCAGCTATGGGAGACGTGCTTTGGAACCTAGAATTTGCTTTGCAGCTCCAAGAAACTGCAATTGAGAATAAACTGGTTGATGACAGCACGAATAACTTTGTGGAAATCTCTCCTGACAACAACTCAAACAACATAGAAACTTATGCCGTTGATGGACCCAGCACTGTGACAAGCACCGGAGGCCATAGTTTGGCAAGTGAGGATTTGGATGATCTAACTCCAAGTGCCGTTTTTTCACAACTGGTGAATCCACAAGGGAGGTAATTGAATTGGCAGGTAGTACATTCATGTTTCTGCATTTGTTGTAGTACATACAGACATT

Ace file of the UniGene biog3_v1.0_unigene2384

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7966	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	FERONIA receptor-like kinase [Cardamine flexuosa]	-	-	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	36%
Blast2go	feronia receptor-like kinase	-	-	81%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	0.0	81%
Blast2go	Non-specific protein-tyrosine kinase.	EC:2.7.10.2	-	0.0	81%

Source	GOs	Term	Type	Identity
Blast2go	protein autophosphorylation	GO:0046777	Biological Process	81%
Blast2go	pollen tube reception	GO:0010483	Biological Process	81%
Blast2go	post-embryonic development	GO:0009791	Biological Process	81%
Blast2go	defense response to fungus	GO:0050832	Biological Process	81%
Blast2go	protein serine/threonine kinase activity	GO:0004674	Molecular Function	81%
Blast2go	receptor activity	GO:0004872	Molecular Function	81%
Blast2go	ATP binding	GO:0005524	Molecular Function	81%
Blast2go	non-membrane spanning protein tyrosine kinase activity	GO:0004715	Molecular Function	81%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	81%
Blast2go	filiform apparatus	GO:0043680	Cellular Component	81%
Blast2go	plasma membrane	GO:0005886	Cellular Component	81%

Source	InterPros	Term	Type	Identity
Sma3	Histone-like bacterial DNA-binding protein	IPR000119	-	-
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	Oxidoreductase, molybdopterin-binding domain	IPR000572	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Isopenicillin N synthase, conserved site	IPR002057	-	-
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	Peptidase S16, lon N-terminal	IPR003111	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-
Sma3	SKG6/AXL2 alpha-helix transmembrane domain	IPR014805	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Zinc finger, RING-type, conserved site	IPR017907	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3	Peroxidase, active site	IPR019794	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A815

Fln msg: your sequence is shorter than subject: 114 - 428

Fln protein: NVINPESLKKYGEAAEKCLAEQGVERPAMGDVLWNLEFALQLQETAIENKLVDDSTNNFVEISPDNNSNNIETYAVDGPSTVTSTGGHSLASEDLDDLTPSAVFSQLVNPQGR*

Protein Length: 115

Fln nts: AATGTAATAAATCCAGAGTCCCTTAAGAAGTATGGTGAGGCAGCTGAAAAATGTCTTGCCGAGCAAGGGGTTGAAAGGCCAGCTATGGGAGACGTGCTTTGGAACCTAGAATTTGCTTTGCAGCTCCAAGAAACTGCAATTGAGAATAAACTGGTTGATGACAGCACGAATAACTTTGTGGAAATCTCTCCTGACAACAACTCAAACAACATAGAAACTTATGCCGTTGATGGACCCAGCACTGTGACAAGCACCGGAGGCCATAGTTTGGCAAGTGAGGATTTGGATGATCTAACTCCAAGTGCCGTTTTTTCACAACTGGTGAATCCACAAGGGAGGTAA___TTGAATTGGCAGGTAGTACATTCATGTTTCTGCATTTGTTGTAGTACATACAGACATT

Fln Alignment:

Contig2384___ESLKKYGEAAEKCLAEQGVERPAMGDVLWNLEFALQLQETAIENKLVDDSTNNFVEISPDNNSNNIET
D5A815_________________ESLATVIEITCKCLSKEPASRPSVEDVLWNLQYAAQVQDTSGGDLQGDDD-------SPDHFSTSLKS

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
293		33	66		0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain