SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene2379

Length: 322 nt

UniGene Fasta

>biog3_v1.0_unigene2379
TTGCGAGACTGATGATAGCACTGCAAGAACTTGATTTGGAAGTTCTCCATGCAAGTATTTCTACTTTGAAGGATTCCTTAATTATCCAGACAATCATTGTTAAGATGACCAGAGGTTTGTACACGGAAGACCAACTCCACGCCCTGCTTGGTAAGAAAGTCGCTGAATCTCCGAATTAAGTAGTGGAATATCACTACAATATTGAGAATTTTCCTTTGAATGCTGCACCGTGAATTGTGTTTCGGAAAGGAAATGGTGATGGTGTCCTCTAACACCATTTTCACAATGAAAACACCATTTTGTAACATAATTCAAGATTTTT

Ace file of the UniGene biog3_v1.0_unigene2379

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1060	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	phaseolin G-box binding protein PG2 [Phaseolus vulgaris]	-	-	1.4013e-45	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	89%
Blast2go	transcription factor	-	-	0.0	71%

Source	GOs	Term	Type	Identity
Blast2go	defense response	GO:0006952	Biological Process	71%
Blast2go	anthocyanin biosynthetic process	GO:0009718	Biological Process	71%
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	71%
Blast2go	transcription regulator activity	GO:0030528	Molecular Function	71%
Blast2go	bHLH transcription factor binding	GO:0043425	Molecular Function	71%
Blast2go	nucleus	GO:0005634	Cellular Component	71%

Source	InterPros	Term	Type	Identity
Sma3		IPR001092	-	-
Sma3	Helix-loop-helix DNA-binding	IPR011598	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LLU3

Fln msg: your sequence is shorter than subject: 59 - 582

Fln protein: ARLMIALQELDLEVLHASISTLKDSLIIQTIIVKMTRGLYTEDQLHALLGKKVAESPN*

Protein Length: 60

Fln nts: TTGCGAGACTGATGATAGCACTGCAAGAACTTGATTTGGAAGTTCTCCATGCAAGTATTTCTACTTTGAAGGATTCCTTAATTATCCAGACAATCATTGTTAAGATGACCAGAGGTTTGTACACGGAAGACCAACTCCACGCCCTGCTTGGTAAGAAAGTCGCTGAATCTCCGAATTAA___GTAGTGGAATATCACTACAATATTGAGAATTTTCCTTTGAATGCTGCACCGTGAATTGTGTTTCGGAAAGGAAATGGTGATGGTGTCCTCTAACACCATTTTCACAATGAAAACACCATTTTGTAACATAATTCAAGATTTTT

Fln Alignment:

Contig2379___ARLMIALQELDLEVLHASISTLKDSLIIQTIIVKMTRGLYTEDQLHALLGKKVAE
B8LLU3_________________ARLMTALQELDLEVLHASISTVKDSLIIQTVIVKMTRGLYTEEQLHALLCKKVAD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain