SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene2351

Length: 1308 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene2351

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2994	28/28

Source	Descriptions	Term	Type	Identity
AutoFact	replication factor C subunit 3 [Arabidopsis thaliana] gb\|AAG51681.1\|AC010704_25 putative replication factor C; 24844-22715 [Arabidopsis thaliana] gb\|AAL38893.1\| putative replication factor C [Arabidopsis thaliana] gb\|AAM51357.1\| putative replication facto	-	-	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	replication factor c subunit 5-like	-	-	83%

Source	ECs	Term	Type	e value	Identity
Blast2go	DNA-directed DNA polymerase.	EC:2.7.7.7	-	0.0	83%

Source	KEGGs	Term	Identity
Blast2go	Purine metabolism	00230	83%
Blast2go	Pyrimidine metabolism	00240	83%
Blast2go	Metabolic pathways	01100	83%

Source	GOs	Term	Type	Identity
Blast2go	translation	GO:0006412	Biological Process	83%
Blast2go	negative regulation of defense response	GO:0031348	Biological Process	83%
Blast2go	DNA replication	GO:0006260	Biological Process	83%
Blast2go	ribosome biogenesis	GO:0042254	Biological Process	83%
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	83%
Blast2go	DNA-directed DNA polymerase activity	GO:0003887	Molecular Function	83%
Blast2go	rRNA binding	GO:0019843	Molecular Function	83%
Blast2go	structural constituent of ribosome	GO:0003735	Molecular Function	83%
Blast2go	DNA clamp loader activity	GO:0003689	Molecular Function	83%
Blast2go	ATP binding	GO:0005524	Molecular Function	83%
Blast2go	ribosome	GO:0005840	Cellular Component	83%
Blast2go	chloroplast	GO:0009507	Cellular Component	83%
Blast2go	nucleus	GO:0005634	Cellular Component	83%
Blast2go	DNA replication factor C complex	GO:0005663	Cellular Component	83%

Source	InterPros	Term	Type	Identity
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ATPase, AAA-type, core	IPR003959	-	-
Sma3	Replication factor C, C-terminal domain	IPR013748	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AEA7

Fln msg: your sequence is longer than subject: 260 - 200

Fln protein: MILELNASDDRGIEVVRNQIQDFASTQSFSFGAKSSVKLVLLDEADAMTKDAQFSLRRVMEKYTKSTRFALICNYVNKIIPALQSRCTRFRFAPLDPANVTERLRHVITEERLDVTEDGLSAIVRLSCGDMRKALNILQSTQMASPHVTEEAVYLCTGNPMPKDIEQISFWLLNESFTNAYHYISEMKTSKGLALVDVIREIPLFIFNIKMPAAIRVQLINALADIEYRLAFGTSEKLQLGSLVGAFTHARCALVAAAK*

Protein Length: 261

Fln nts: AATGTAATTGATAGGCTGACGAGCGAGAACAAGCTGCCTCATCTCCTTCTTTACGGTCCGCCTGGTACCGGGAAGACATCAACTGTGTTGGCTGTCGCACGCAAGCTTTATGGGAGTCAGTACCAGAAC_-_ATGATCCTGGAGTTGAATGCTTCGGATGATCGGGGAATTGAAGTTGTTCGCAATCAAATTCAGGATTTTGCAAGCACACAAAGTTTCAGTTTTGGTGCAAAGTCGAGTGTAAAACTAGTCTTGTTGGATGAGGCAGATGCCATGACAAAAGATGCTCAGTTTTCCTTGCGCAGGGTTATGGAGAAATACACAAAGAGCACAAGGTTTGCTCTCATCTGCAATTATGTCAATAAGATTATTCCAGCTTTGCAATCAAGGTGCACACGATTTCGGTTTGCTCCTCTTGATCCTGCCAATGTTACGGAGCGGCTACGACATGTCATAACTGAAGAAAGGCTTGATGTCACAGAGGATGGCTTGTCTGCAATAGTGAGGCTTAGCTGCGGTGACATGAGAAAGGCTCTTAATATTTTGCAGTCTACACAGATGGCTTCTCCTCATGTAACTGAAGAAGCTGTCTACCTGTGCACGGGGAATCCAATGCCCAAGGATATTGAACAAATATCATTCTGGTTGCTAAATGAGTCGTTTACAAATGCTTATCACTACATATCGGAAATGAAGACTAGTAAGGGGCTGGCTCTTGTTGATGTTATAAGAGAAATTCCACTGTTTATTTTCAATATCAAAATGCCTGCAGCCATTCGTGTCCAACTGATTAATGCTTTGGCTGACATTGAGTATAGGTTGGCATTTGGTACAAGTGAGAAACTGCAACTTGGATCTCTTGTCGGTGCTTTTACACATGCTCGCTGTGCATTGGTTGCAGCTGCCAAGTGA___CTTTTAAAGAATTTCATTTCCAGGTACAAGAGGGGTGTGGGGGAGTATGCAGTAAAGGGGTTTTTGCGAGTGCTTGTTTCTTTTAATATTCATGGAAATTGTACATTGAAAGTGAAGGGATGAGCAACAAGGAGCAACTCTGCACTGCTTTTGTGATGTAAAGCAACACCTTGCATTCTTATTGTTGACTATGGATGATGAAGATGAGTACATTTCAGGAATCAATGATACTGGGTTATTTCATGTTGAAATCATCCTGCTACCTTTGTCATGTTAGTTCATGTTAGATTGTGCTCACTATCCTAGAGATATTGAGGTTAAGGGTTTCTGTGTATTAGGTATTATTTGAGGCTTATTTATGCCCTTGCAAATTGTGATATTCATTCTAATCTTTACATT

Fln Alignment:

Contig2351___MEKYTKSTRFALICNYVNKIIPALQSRCTRFRFAPLDPANVTERLRHVITEERLDVTEDGLSAIVRLSCGDMRKALNILQSTQMASPHVTEEAVYLCTGNPMPKDIEQISFWLLNESFTNAYHYISEMKTSKGLALVDVIREIPLFIFNIKMPAAIRVQLINALADIEYRLAFGTSEKLQLGSLVGAFTHARC
D5AEA7_________________MEKYTKSTRFALICNYVNKIIPALQSRCTRFRFAPLDPANVTERLRHVISEERLDVTEDGLSAIVRLSCGDMRKALNILQSTQMASPHVTEEAVYLCTGNPMPKDIEQISFWLLNESFTNAYRYISEMKTSKGLALVDVIREIPLFIFNIKMPAAIRVQLINALADIEYRLAFGTNEKLQLGSLVSAFTHARC

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
586	25		75		0.996473
587	25	75			0.996473
744	25			75	0.996473
745	25		75		0.996473
747			25	75	0.996473
810	16			83	0.994512
813	83			16	0.994512
879	75			25	0.996473
957		33	66		0.997452
959			66	33	0.997452
1172	16	83			0.994512
1173		16		83	0.994512
1174	16		83		0.994512
1175		83		16	0.994512
1189	20			80	0.995493
1190		20		80	0.995493
1223		33	66		0.997452
1224	66		33		0.997452
1228	33			66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain