SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene2341

Length: 314 nt

UniGene Fasta

>biog3_v1.0_unigene2341
AATGTCAAAGAGCAGCTGCTGCCTCTTTACTGGGGAAGCTTGTTGGGCAGCCGATGCATGGGCCTCGGGTGGCCATAGCACTGGCCAGGTTTTTTCCAGATGGATTGGTTTCTGCAATAAGAGACGGACCTGGTGAAGCTGTTGTTACAGCTCTCGAGCAGACTTCAGAGACACCGGAACTAGTTTGGACACCAGCAATGGCGGCCTCTCTAGGAGCACAAATTGCAACCATGGCATCTGATCTTTATCGTGAACAGATGAAAGGTCGGGTGGTAGACTGGGATCTTCCAGAGCATGCATCTGGTCAGGAGATG

Ace file of the UniGene biog3_v1.0_unigene2341

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene25065	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	DNAJ heat shock N-terminal domain-containing protein [Arabidopsis thaliana] gb\|AEC07904.1\| DNAJ heat shock N-terminal domain-containing protein [Arabidopsis thaliana]	-	-	77%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	91%
Blast2go	dnaj homolog subfamily c member 13-like	-	-	87%

Source	GOs	Term	Type	Identity
Blast2go	positive gravitropism	GO:0009958	Biological Process	87%
Blast2go	response to starvation	GO:0042594	Biological Process	87%
Blast2go	protein targeting to vacuole	GO:0006623	Biological Process	87%
Blast2go	amyloplast organization	GO:0009660	Biological Process	87%
Blast2go	cell division	GO:0051301	Biological Process	87%
Blast2go	negative gravitropism	GO:0009959	Biological Process	87%
Blast2go	endosome organization	GO:0007032	Biological Process	87%
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	87%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	87%
Blast2go	late endosome	GO:0005770	Cellular Component	87%
Blast2go	microsome	GO:0005792	Cellular Component	87%
Blast2go	trans-Golgi network	GO:0005802	Cellular Component	87%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	87%
Blast2go	plasma membrane	GO:0005886	Cellular Component	87%

Source	InterPros	Term	Type	Identity
Sma3	Heat shock protein DnaJ, N-terminal	IPR001623	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	VQ	IPR008889	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3		IPR015609	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A5C2L8

Fln msg: Distance to subject end: 326 aas, your sequence is shorter than subject: 104 - 1276

Fln protein: CQRAAAASLLGKLVGQPMHGPRVAIALARFFPDGLVSAIRDGPGEAVVTALEQTSETPELVWTPAMAASLGAQIATMASDLYREQMKGRVVDWDLPEHASGQEM

Protein Length: 105

Fln nts: AATGTCAAAGAGCAGCTGCTGCCTCTTTACTGGGGAAGCTTGTTGGGCAGCCGATGCATGGGCCTCGGGTGGCCATAGCACTGGCCAGGTTTTTTCCAGATGGATTGGTTTCTGCAATAAGAGACGGACCTGGTGAAGCTGTTGTTACAGCTCTCGAGCAGACTTCAGAGACACCGGAACTAGTTTGGACACCAGCAATGGCGGCCTCTCTAGGAGCACAAATTGCAACCATGGCATCTGATCTTTATCGTGAACAGATGAAAGGTCGGGTGGTAGACTGGGATCTTCCAGAGCATGCATCTGGTCAGGAGATG

Fln Alignment:

Contig2341___QRAAAASLLGKLVGQPMHGPRVAIALARFFPDGLVSAIRDGPGEAVVTALEQTSETPELVWTPAMAASLGAQIATMASDLYREQMKGRVVDWDLPEHASGQE
A5C2L8_________________QRAAAASLLGKLVGQPMHGPRVAITLARFLPDGLVSVIRDGPGEAVVSALEQTTETPELVWTPAMAASLSAQIATMASDLYREQMKGRVVDWDVPEQASGQQ

SNPs (tot: 3)

Position	A %	C %	T %	Probability
129	25	75		0.996473
130	25	75		0.996473
200	75		25	0.996473

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain