SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene2269

Length: 1107 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene2269

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7517	13/13

Source	Descriptions	Term	Type	Identity
AutoFact	Beta-galactosidase n=1 Tax=Persea americana RepID=Q0EDB0_PERAE	-	-	65%
FL-Next	sp=Beta-galactosidase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	44%
Blast2go	beta galactosidase 9	-	-	73%

Source	ECs	Term	Type	e value	Identity
Blast2go	Beta-galactosidase.	EC:3.2.1.23	-	0.0	73%

Source	KEGGs	Term	Identity
Blast2go	Galactose metabolism	00052	73%
Blast2go	Other glycan degradation	00511	73%
Blast2go	Glycosaminoglycan degradation	00531	73%
Blast2go	Sphingolipid metabolism	00600	73%
Blast2go	Glycosphingolipid biosynthesis - ganglio series	00604	73%
Blast2go	Metabolic pathways	01100	73%

Source	GOs	Term	Type	Identity
Blast2go	metabolic process	GO:0008152	Biological Process	73%
Blast2go	binding	GO:0005488	Molecular Function	73%
Blast2go	beta-galactosidase activity	GO:0004565	Molecular Function	73%
Blast2go	plant-type cell wall	GO:0009505	Cellular Component	73%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	73%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	73%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	-
Sma3	D-galactoside/L-rhamnose binding SUEL lectin domain	IPR000922	-	-
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	Glycoside hydrolase, family 35	IPR001944	-	-
Sma3	Glycoside hydrolase, family 2, N-terminal	IPR006104	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NUR2

Fln msg: Distance to subject end: 166 aas, your sequence is shorter than subject: 369 - 861

Fln protein: LCEPALISVDGDPQYIRLGPQQEAHVYKYSGESKVANMTVIRKTGTCAAFLANIDSHSSATVHFNGKVFHLPPWSVSILPDCKNVVFNTAKVGSQTSIVSTKRRPALSQGIFDSEILELGVKVSQLSKVWSEYKEPIGLWGEGNFSAKGILEHLNVTKDSTDYLWYTTSINISEADSAFWLVHNKYPSLVIDAVRDVVRIFVNGQIAGSSSGYWVRVEQPLNLSIGYNEIAILSEMIGLQNYGAFLEKDGGGLRGSVTLQGLVSGDRNLTMACWGYQVGLKGEYLEIYSPERQDGVEWSEIREEPQKSPFTWYKTVFDAPDGDNPVTLDLGSMGKGQVWVNGKSLGRHWPSYLAPDTGCNAVCDYRQDI

Protein Length: 370

Fln nts: CTCTGTGAGCCAGCTCTAATTTCTGTTGATGGAGATCCTCAGTATATACGTCTTGGTCCTCAGCAAGAGGCACATGTATATAAATATTCTGGAGAATCCAAAGTTGCAAATATGACTGTAATTAGGAAGACAGGGACATGTGCAGCATTTCTTGCTAATATCGATAGTCATTCTTCAGCTACTGTACATTTTAATGGAAAGGTGTTTCATCTACCACCTTGGTCTGTCAGCATATTGCCTGATTGTAAGAATGTGGTATTCAACACTGCAAAGGTTGGATCTCAAACATCCATTGTAAGCACGAAAAGGAGGCCTGCTCTTTCACAAGGAATCTTTGATTCTGAAATTTTGGAACTTGGAGTAAAAGTTTCACAATTATCAAAAGTGTGGAGTGAATATAAAGAGCCAATTGGTCTGTGGGGAGAAGGAAATTTTTCAGCAAAAGGCATATTAGAACACTTAAATGTCACCAAGGATTCTACTGATTATCTATGGTATACAACAAGCATTAATATTTCAGAAGCAGACAGTGCATTCTGGTTGGTACACAATAAATATCCATCCCTTGTCATTGATGCTGTGCGTGATGTGGTCCGTATATTTGTCAATGGTCAGATTGCAGGGAGTTCAAGTGGTTATTGGGTCCGAGTGGAGCAACCTCTGAACTTAAGTATAGGGTACAACGAAATAGCTATTCTCTCTGAAATGATTGGATTACAGAACTATGGGGCTTTCCTTGAAAAAGATGGTGGAGGCTTGAGAGGTTCTGTGACATTACAAGGCCTTGTATCAGGAGATAGAAACCTAACAATGGCATGTTGGGGATATCAGGTTGGTTTAAAGGGTGAATATTTGGAAATCTATTCACCTGAACGACAAGATGGTGTGGAATGGTCAGAAATACGAGAAGAGCCTCAAAAGAGTCCTTTCACATGGTACAAGACAGTATTTGATGCTCCAGATGGTGACAATCCTGTAACACTGGACTTGGGGAGTATGGGAAAGGGTCAAGTTTGGGTTAATGGGAAGAGTTTAGGGAGGCATTGGCCATCCTACCTTGCACCAGATACTGGTTGTAATGCTGTATGTGATTATCGACAAGACATT

Fln Alignment:

Contig2269___LCEPALISVDGDPQYIRLGPQQEAHVYKYSGESKVANMTVIRKTGTCAAFLANIDSHSSATVHFNGKVFHLPPWSVSILPDCKNVVFNTAKVGSQTSIVSTKRRPALSQGIFDSEILELGVKVSQLSKVWSEYKEPIGLWGEGNFSAKGILEHLNVTKDSTDYLWYTTSINISEADSAFWLVHNKYPSLVIDAVRDVVRIFVNGQIAG----SSSGYWVRVEQPLNLSIGYNEIAILSEMIGLQNYGAFLEKDGGGLRGSVTLQGLVSGDRNLTMACWGYQVGLKGEYLEIYSPERQDGVEWSEIREEPQKSPFTWYKTVFDAPDGDNPVTLDLGSMGKGQVWVNGKSLGRHWPSYLAPDTGCNAVCDYR
A9NUR2_________________LCEAALVNAESN--YTSLGSGLEAHVYSPG-------------SGTCAAFLANSNTQSDATVKFNGNSYHLPAWSVSILPDCKNVVFNTAKIGSQTTSVQMNPANLILAGSNSMKGTDSANAAS-----WSWLHEQIGIGGSNTFSKPGLLEQINTTVDSSDYLWYTTSIQVD--DNEPFLHNGTQPVLHVQSLGHALHVFINGEFAGRGAGSSSSSKIALQTPITLKSGKNNIDLLSITVGLQNYGSFFDTWGAGITGPVILQGFKDGEHDLSTQQWTYQIGLTGEQLGIYSGDTKASAQWVAGSDLPTKQPMIWYKTNFDAPSGNDPVALNLLGMGKGVAWVNGQSIGRYWPSYIASQSGCTDSCDYR

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
250		20	80		0.995493
252	80			20	0.995493
502	66		33		0.997452
617	75		25		0.996473
624			75	25	0.996473
625			75	25	0.996473
1047		50		50	1.0
1064	25			75	0.996473
1068		75		25	0.996473
1069		75		25	0.996473
1075	33	66			0.997452
1076		33		66	0.997452
1077	33		66		0.997452
1078			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain