SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene2267

Length: 419 nt

UniGene Fasta

>biog3_v1.0_unigene2267
AATGTATTTAAATCATTCAAAATTCAAATGGCATAGGGTGGTTGTGCAAGGACCTGGGCCAGGACCACGCTATGGGCATGTAATGGACTTGATTGCTCAACGATACCTTGTAACTGTTAGTGGAAATGATGGGAAGCGGACATTATCTGATGCATGGGCACTGGATACATCACAGAAGCCATACCGGTGGCAGAGGCTTGAGCCAGAAGGAGATATGCCATCTGCGAGAATGTATGCAACTGCTAGTGCACGTGCAGATGGAATGCTGCTGCTGTGTGGAGGAAGGGATAGTTCTGGTCTGCCCCAATCAGATGCATATGGCTTGCTGAAACATAGAGATGGACGTTGGGAGTGGACTCTTGCTCCTGGAGTGTCTCCATCTCCTCGGTATCAACATGCAGCAGTCTTTGTAGAACATT

Ace file of the UniGene biog3_v1.0_unigene2267

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7712	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	Serine/threonine-protein phosphatase (Fragment) n=2 Tax=Vitis vinifera RepID=D7TP64_VITVI	-	-	67%
FL-Next	sp=Serine/threonine-protein phosphatase BSL1 homolog; Oryza sativa subsp. japonica (Rice).	-	-	85%
Blast2go	serine threonine protein phosphatase	-	-	82%

Source	GOs	Term	Type	Identity
Blast2go	protein serine/threonine phosphatase activity	GO:0004722	Molecular Function	82%
Blast2go	iron ion binding	GO:0005506	Molecular Function	82%
Blast2go	manganese ion binding	GO:0030145	Molecular Function	82%
Blast2go	protein binding	GO:0005515	Molecular Function	82%
Blast2go	plasma membrane	GO:0005886	Cellular Component	82%

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein S16	IPR000307	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3	Metallophosphoesterase domain	IPR004843	-	-
Sma3	Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase	IPR006186	-	-
Sma3	Kelch repeat type 1	IPR006652	-	-
Sma3	Kelch repeat type 2	IPR011498	-	-
Sma3	Serine/threonine protein phosphatase, BSU1	IPR012391	-	-
Sma3	Kelch-type beta propeller	IPR015915	-	-
Sma3	Galactose oxidase, beta-propeller	IPR015916	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	DNA topoisomerase, type IIA, conserved site	IPR018522	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q60EX6

Fln msg: Distance to subject end: 611 aas, your sequence is shorter than subject: 139 - 883

Fln protein: MYLNHSKFKWHRVVVQGPGPGPRYGHVMDLIAQRYLVTVSGNDGKRTLSDAWALDTSQKPYRWQRLEPEGDMPSARMYATASARADGMLLLCGGRDSSGLPQSDAYGLLKHRDGRWEWTLAPGVSPSPRYQHAAVFVEH

Protein Length: 140

Fln nts: AATGTATTTAAATCATTCAAAATTCAAATGGCATAGGGTGGTTGTGCAAGGACCTGGGCCAGGACCACGCTATGGGCATGTAATGGACTTGATTGCTCAACGATACCTTGTAACTGTTAGTGGAAATGATGGGAAGCGGACATTATCTGATGCATGGGCACTGGATACATCACAGAAGCCATACCGGTGGCAGAGGCTTGAGCCAGAAGGAGATATGCCATCTGCGAGAATGTATGCAACTGCTAGTGCACGTGCAGATGGAATGCTGCTGCTGTGTGGAGGAAGGGATAGTTCTGGTCTGCCCCAATCAGATGCATATGGCTTGCTGAAACATAGAGATGGACGTTGGGAGTGGACTCTTGCTCCTGGAGTGTCTCCATCTCCTCGGTATCAACATGCAGCAGTCTTTGTAGAACATT

Fln Alignment:

Contig2267___LNHSKFKWHRVVVQGPGPGPRYGHVMDLIAQRYLVTVSGNDGKRTLSDAWALDTSQKPYRWQRLEPEGDMPSARMYATASARADGMLLLCGGRDSSGLPQSDAYGLLKHRDGRWEWTLAPGVSPSPRYQHAAVFV
Q60EX6_________________LTNDKFKWHRVVVQGAGPGPRYGHCMDLVAQRYLVTVSGNDGKRVLSDAWALDTAQKPYRWQKLNPDGDRPSARMYATASARTDGMLLLCGGRDASGMPLSDAYGLLMHTSGQWEWTLAPGVSPSPRYQHAAVFV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain