SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene2245

Length: 468 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene2245
CAAGGACAAATGGCGGAATCTCCTCAAGGATTACAGGAAGCTCAGGCACCAGCAGAAACCTGACACGCCCAAGCTAGGATATTATAAGGATATCGAAGATGTCATGGTCGAGAGGGCCAAGCATACGCCGCATCGGAGCCCTGTAGGAAGTACGAATCTACGATTCAGATGGTGCCCAAAGATTTTGACAGGCCTGCTTTAAATATCGACCAAAGGTTGGATAATGACAGCCAAACAACGTCTTTGTTGTCACACGAGTCACCATTGGCAAATGGGATGAGTCCATGGAGTTGGAGGGATACTAGTGCCAATGGCTTACCTCAGTGGAATACAGCAATGGATCGCAGTATAACTGCAGGGAGGGTTATTGCTGTAAAATGGGGTGATGTAACCCGAAGAGTAGGTATTGATGGTTCAGCAGAAGCCATTAAGGATGCCATCAGGAGTGTGTTTGGATTGAGATCGAAA

Ace file of the UniGene biog3_v1.0_unigene2245 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1668	5/5

Source	Descriptions	Term	Type	Identity
AutoFact	Transcription factor, putative n=1 Tax=Ricinus communis RepID=B9RMJ9_RICCO	-	-	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	50%
Blast2go	dna-binding protein	-	-	70%

Source	GOs	Term	Type	Identity
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	70%
Blast2go	identical protein binding	GO:0042802	Molecular Function	70%
Blast2go	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	70%
Blast2go	sequence-specific DNA binding	GO:0043565	Molecular Function	70%
Blast2go	nucleus	GO:0005634	Cellular Component	70%

Source	InterPros	Term	Type	e value	Identity
Sma3	SANT/Myb domain	IPR001005	-	0.0	-
Sma3	Myb-like domain	IPR017877	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NQR4

Fln msg: Separated hits, possible frame ERROR between 142 and 175, Distance to subject end: 100 aas, your sequence is shorter than subject: 156 - 348

Fln protein: KDKWRNLLKDYRKLRHQQKPDTPKLGYYKDIEDVMVERAKHTPHRSxxxxxxxxxxxxPKDFDRPALNIDQRLDNDSQTTSLLSHESPLANGMSPWSWRDTSANGLPQWNTAMDRSITAGRVIAVKWGDVTRRVGIDGSAEAIKDAIRSVFGLRSK

Protein Length: 157

Fln nts: CAAGGACAAATGGCGGAATCTCCTCAAGGATTACAGGAAGCTCAGGCACCAGCAGAAACCTGACACGCCCAAGCTAGGATATTATAAGGATATCGAAGATGTCATGGTCGAGAGGGCCAAGCATACGCCGCATCGGAGCCCxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGCCCAAAGATTTTGACAGGCCTGCTTTAAATATCGACCAAAGGTTGGATAATGACAGCCAAACAACGTCTTTGTTGTCACACGAGTCACCATTGGCAAATGGGATGAGTCCATGGAGTTGGAGGGATACTAGTGCCAATGGCTTACCTCAGTGGAATACAGCAATGGATCGCAGTATAACTGCAGGGAGGGTTATTGCTGTAAAATGGGGTGATGTAACCCGAAGAGTAGGTATTGATGGTTCAGCAGAAGCCATTAAGGATGCCATCAGGAGTGTGTTTGGATTGAGATCGAAA

Fln Alignment:

Contig2245___DKWRNLLKDYRKLRHQQKPD--TPKLGYYKDIEDVMVERAKHTPHRSPxxxxxxxxxxxPKDFDRPALNIDQRLDNDSQTTSLLSHESPLANGMSPWSWRDTSANGLPQWNTAMDRSITAGRVIAVKWGDVTRRVGIDGSAEAIKDAIRSVFGLRSK
A9NQR4_________________DKWRNLLKEYKKAKHHHDSHDGSAKMSCYKDLEELLRERAKVAPYRSPxxxxxxxxxxxPKGTGRSPFNLERRLDHDGLPLALPLSDATAANGTPPWNWRDATGNG------GENHTSYNGKVILVKWGDITRRIGIDGTAEAISGAIRPAFGLRTK

SNPs (tot: 3)

Position	A %	C %	T %	Probability
185	25	75		0.996473
327		80	20	0.995493
328		25	25	0.995533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain