SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene2243

Length: 530 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene2243
AATGTGATGAATATGGAGCTCTTGTTTACGAGGGGCGATGGGGTATCTATGGCGTGTCATTGCCTGGTAGAGTGACCTTTAGTCCAGGGAACGTGGGGTATGCTACATATGGTGCTCCACGTCCACAACAGACAAAGATCATTAGCAATGACACATGGAGGATTATTGATGCCATTCAAGAGAGAAACGTGAGAGAAATGGGAAGAAAGTTTGAACAGAAGGAACATGGAGACTGTATAAAGCGGAGAGAGCTTTAGAAGTAATCGATCCCGCGTTGAAGGGCAGTTATTCGTCCGAGGAAGGGATTAGGGCGATCCAAATTGGTCTTTTATGTACGCAAGCAGCTGCAGCGTTGCGGCCATCAATGTCGCAGGTGGTGTTGATGCTGACAAATGAGCGAGAAAATCTACCTTCGCCCACAAAGCCTGCATTCGTAGATCTGGATGGTGTGGTGGGGACAAATGACAAAGTTAAACGTCCTACAGTTACTGTAACTCCCCCTCAGGATCCAGATAAACCATCAAGACATT

Ace file of the UniGene biog3_v1.0_unigene2243 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3099	3/5
SustainPine v2.0	sp_v2.0_unigene33254	2/5

Source	Descriptions	Term	Type	Identity
AutoFact	AAA-type ATPase family protein [Arabidopsis thaliana] gb\|AED97923.1\| AAA-type ATPase family protein [Arabidopsis thaliana]	-	-	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	73%
Blast2go	aaa-type atpase family protein	-	-	75%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydrolases, Acting on peptide bonds (peptide hydrolases), Metalloendopeptidases.	EC:3.4.24.-	-	0.0	75%
Blast2go	Adenosinetriphosphatase.	EC:3.6.1.3	-	0.0	75%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Purine metabolism	00230		0.0	75%

Source	GOs	Term	Type	Identity
Blast2go	proteolysis	GO:0006508	Biological Process	75%
Blast2go	embryo development	GO:0009790	Biological Process	75%
Blast2go	metalloendopeptidase activity	GO:0004222	Molecular Function	75%
Blast2go	ATP binding	GO:0005524	Molecular Function	75%
Blast2go	ATPase activity	GO:0016887	Molecular Function	75%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	75%

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein S7	IPR000235	-	-
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	Peptidase M41	IPR000642	-	-
Sma3	Caspase Recruitment	IPR001315	-	-
Sma3		IPR001984	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ATPase, AAA-type, core	IPR003959	-	-
Sma3	ATPase, AAA-type, conserved site	IPR003960	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Peptidase, FtsH	IPR005936	-	-
Sma3	26S proteasome subunit P45	IPR005937	-	-
Sma3	Twin-arginine translocation pathway, signal sequence	IPR006311	-	-
Sma3	Peptidase M41, FtsH extracellular	IPR011546	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-
Sma3	Polysaccharide lyase 8, N-terminal alpha-helical	IPR012970	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3		IPR017909	-	-
Sma3	Peptidase S26A, signal peptidase I, serine active site	IPR019756	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PPW7

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 22 aas, your sequence is shorter than subject: 176 - 702

Fln protein: M**IWSSCLRGAMGYLWRVIAW*SDL*SRERGVCYIWCSTSTTDKDH*Q*HMEDY*CHSREKRERNGKKV*TEGTWRLYKAERALEVIDPALKGSYSSEEGIRAIQIGLLCTQAAAALRPSMSQVVLMLTNERENLPSPTKPAFVDLDGVVGTNDKVKRPTVTVTPPQDPDKPSRH

Protein Length: 177

Fln nts: AATGTGATGAATATGGAGCTCTTGTTTACGAGGGGCGATGGGGTATCTATGGCGTGTCATTGCCTGGTAGAGTGACCTTTAGTCCAGGGAACGTGGGGTATGCTACATATGGTGCTCCACGTCCACAACAGACAAAGATCATTAGCAATGACACATGGAGGATTATTGATGCCATTCAAGAGAGAAACGTGAGAGAAATGGGAAGAAAGTTTGAACAGAAGGAACATGGAGACTGTATAAAGCGGAGAGAGCTTTAGAAGTAATCGATCCCGCGTTGAAGGGCAGTTATTCGTCCGAGGAAGGGATTAGGGCGATCCAAATTGGTCTTTTATGTACGCAAGCAGCTGCAGCGTTGCGGCCATCAATGTCGCAGGTGGTGTTGATGCTGACAAATGAGCGAGAAAATCTACCTTCGCCCACAAAGCCTGCATTCGTAGATCTGGATGGTGTGGTGGGGACAAATGACAAAGTTAAACGTCCTACAGTTACTGTAACTCCCCCTCAGGATCCAGATAAACCATCAAGACATT

Fln Alignment:

Contig2243___EGTWRLYKAERALEVIDPALKGSYSSEEGIRAIQIGLLCTQAAAALRPSMSQVVLMLTNERENLPSPTKPAFVDLDGVVGTNDKVKR
C0PPW7_________________EGTWRLYKANRGLEIMDPALKDSYSWEDGIRAIKIGLLCTQAAAALRPSMFRVVSMLTSEREHLPSPTRPAFIDLD-AAGAAQQLKR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain