SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene2239

Length: 393 nt

UniGene Fasta

>biog3_v1.0_unigene2239
GCCCAGCGAGGAGAATGCATGGCGCTTGAATTTCAATCGATTTCCTAGGCCAGAAAGGAAGGAAACGCCTAAGGGCTGCTTGATTGTGTCAGGTCCTTGTAGTGGTGATGGAGTAGCCAAATATTATCAGCAGCAGGGGGAAATGCTTGACGGATTTGCAGAAATGGATTTGGTCACTGATAATTGTGCTTTGCCTGGCATGTCTAAGGAAGACAGCGACAAGCTTGCACGAAGTGAAACAATTGCAATCCATTTATCCAACATAGCAAACGTTGTTCTTTTCATTGCAAAAGTATATGCATCGATAAAGAGTGGTTCGCTAGCCATAATTGCTTCAACATTGGACTCACTTCTGGATCTTCTATCAGGCTTTATTCTTTGGTTCACTGCATT

Ace file of the UniGene biog3_v1.0_unigene2239

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene5707	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	Metal tolerance protein 5 n=4 Tax=Poaceae RepID=MTP5_ORYSJ	-	-	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	71%
Blast2go	metal tolerance protein	-	-	83%

Source	GOs	Term	Type	Identity
Blast2go	response to copper ion	GO:0046688	Biological Process	83%
Blast2go	cellular manganese ion homeostasis	GO:0030026	Biological Process	83%
Blast2go	response to manganese ion	GO:0010042	Biological Process	83%
Blast2go	manganese ion transmembrane transport	GO:0071421	Biological Process	83%
Blast2go	manganese:hydrogen antiporter activity	GO:0010486	Molecular Function	83%
Blast2go	Golgi apparatus	GO:0005794	Cellular Component	83%
Blast2go	late endosome	GO:0005770	Cellular Component	83%
Blast2go	membrane	GO:0016020	Cellular Component	83%

Source	InterPros	Term	Type	Identity
Sma3	Toll/interleukin-1 receptor homology (TIR) domain	IPR000157	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	Cation efflux protein	IPR002524	-	-
Sma3	Leucine-rich repeat, typical subtype	IPR003591	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NTR8

Fln msg: Distance to subject end: 240 aas, your sequence is shorter than subject: 130 - 401

Fln protein: PSEENAWRLNFNRFPRPERKETPKGCLIVSGPCSGDGVAKYYQQQGEMLDGFAEMDLVTDNCALPGMSKEDSDKLARSETIAIHLSNIANVVLFIAKVYASIKSGSLAIIASTLDSLLDLLSGFILWFTA

Protein Length: 131

Fln nts: GCCCAGCGAGGAGAATGCATGGCGCTTGAATTTCAATCGATTTCCTAGGCCAGAAAGGAAGGAAACGCCTAAGGGCTGCTTGATTGTGTCAGGTCCTTGTAGTGGTGATGGAGTAGCCAAATATTATCAGCAGCAGGGGGAAATGCTTGACGGATTTGCAGAAATGGATTTGGTCACTGATAATTGTGCTTTGCCTGGCATGTCTAAGGAAGACAGCGACAAGCTTGCACGAAGTGAAACAATTGCAATCCATTTATCCAACATAGCAAACGTTGTTCTTTTCATTGCAAAAGTATATGCATCGATAAAGAGTGGTTCGCTAGCCATAATTGCTTCAACATTGGACTCACTTCTGGATCTTCTATCAGGCTTTATTCTTTGGTTCACTGCATT

Fln Alignment:

Contig2239___PSEENAWRLNFNRFPRPERKETPK-----GCLIVSGPCSGDGVAKYYQQQGEMLDGFAEMDLVTDNCALPGMSKEDSDKLARSETIAIHLSNIANVVLFIAKVYASIKSGSLAIIASTXXXXXXXXXGFILWFTA
A9NTR8_________________PSEENAWRLSFNRISQFERDERSQQRGFHDCFSLLGPSSGDGVAEYYQQQEEMLEGFTEMDTVAERGYFPGLSKEERDRVARSETIAIRLSNIANIVLFIAKVYASIRSGSLAIIASTLDSLLDLLSGFILWFTA

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
131	25	75			0.996473
135		75		25	0.996473
164	80		20		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain