SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene2207

Length: 332 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene2207
CAACCATGTCAATCACGATTACAACATGATTCACACAGGTGGTGGTTGTTGTGATTGTGGAGACGAAACAGCATGGAAATCAGAAGGTTTTTGCTCTAGACATAGAGGTCCAGGGCAGGTGCAGCCCCTACCACCAAAATATGCAAAGTTTGCAGAGCCTGTATTGGGGGCCCTTCTAATTGAATGGAAAGAGCGTCTACTAGCTGCAGAAAAAGTGGCCGAAGGCAAGCCAAAGAAATGGGATGAACAAAAAGCAGAGGAAAAGGTTGCTTACAAGACAACTTCTGTAATCGTGGAAATGCTGCTTAGATTTTTGTGAATGCAGTGACATT

Ace file of the UniGene biog3_v1.0_unigene2207 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8627	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	zf-UBR domain containing protein	-	-	8.0e-29	51%
FL-Next	tr=Predicted protein; Physcomitrella patens subsp. patens (Moss).	-	-	0.0	60%
Blast2go	protein	-	-	0.0	66%

Source	ECs	Term	Type	e value	Identity
Blast2go	Ubiquitin--protein ligase.	EC:6.3.2.19	-	0.0	66%

Source	GOs	Term	Type	Identity
Blast2go	wax biosynthetic process	GO:0010025	Biological Process	66%
Blast2go	regulation of seed germination	GO:0010029	Biological Process	66%
Blast2go	ubiquitin-dependent protein catabolic process	GO:0006511	Biological Process	66%
Blast2go	regulation of lipid catabolic process	GO:0050994	Biological Process	66%
Blast2go	cuticle hydrocarbon biosynthetic process	GO:0006723	Biological Process	66%
Blast2go	protein ubiquitination	GO:0016567	Biological Process	66%
Blast2go	response to abscisic acid stimulus	GO:0009737	Biological Process	66%
Blast2go	ubiquitin-protein ligase activity	GO:0004842	Molecular Function	66%

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, N-recognin	IPR003126	-	-
Sma3		IPR003455	-	-
Sma3	Adaptor protein ClpS, core	IPR003769	-	-
Sma3	S-adenosyl-L-methionine-dependent methyltransferase, putative	IPR011610	-	-
Sma3	Interleukin-4/interleukin-13, conserved site	IPR018096	-	-
Sma3	Superoxide dismutase, copper/zinc, binding site	IPR018152	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A9TX84

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 1800 aas, your sequence is shorter than subject: 106 - 2048

Fln protein: NHVNHDYNMIHTGGGCCDCGDETAWKSEGFCSRHRGPGQVQPLPPKYAKFAEPVLGALLIEWKERLLAAEKVAEGKPKKWDEQKAEEKVAYKTTSVIVEMLLRFL*

Protein Length: 107

Fln nts: CAACCATGTCAATCACGATTACAACATGATTCACACAGGTGGTGGTTGTTGTGATTGTGGAGACGAAACAGCATGGAAATCAGAAGGTTTTTGCTCTAGACATAGAGGTCCAGGGCAGGTGCAGCCCCTACCACCAAAATATGCAAAGTTTGCAGAGCCTGTATTGGGGGCCCTTCTAATTGAATGGAAAGAGCGTCTACTAGCTGCAGAAAAAGTGGCCGAAGGCAAGCCAAAGAAATGGGATGAACAAAAAGCAGAGGAAAAGGTTGCTTACAAGACAACTTCTGTAATCGTGGAAATGCTGCTTAGATTTTTGTGAATGCAGTGACATT

Fln Alignment:

Contig2207___NHVNHDYNMIHTXXXXXXXXDETAWKSEGFCSRHRGPGQVQPLPPKYAKFAEPVLGALLIEWKERLLAAEKVAEGKPKKWDEQKAEEKVAYKTTSVIVEMLLRF
A9TX84_________________NHATHDYSMIRTGGGCCDCGDVTAWKLSGFCSRHCGPGQVPLLPSSLVEFAAPVLEALLFQWVHTLKAAELVAENRARKWASQQKDEKVACQLSVVYIEMLLEF

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
143	33			66	0.997452
144	33			66	0.997452
146		66	33		0.997452
147		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain