SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene2190

Length: 357 nt

UniGene Fasta

>biog3_v1.0_unigene2190
GTTCGTATTGACATGACATTGGCAAATGAGGATGTTGGGATGTTAGCTTACACATCTTCCATAATTACAGCACCATTTCTCCTTCCAGAACTGGTTGAAAGGGTAGCTAATATGCTCAATTATTTCTTGTTACAATTGGTGGGCCCTCAACGTAAAACTCTCACACTCAAGGATCCTGAAAAATATGAATTCAGACCAAAAAAACTGTTGAAGCAAATTGTTGAAATTTATGTGCACCTGGCTAGGGGAGATAAGGAGAATGCTTTTCCACTTGCTATATCAAGGGATGGTCGCTCTTATAATGATGAGTTATTTTCAGCTGCAGCCGAAGTCCTTCAAAAAATAGGTGAAGACATT

Ace file of the UniGene biog3_v1.0_unigene2190

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2092	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	putative ubiquitin conjugation factor E4 [Arabidopsis thaliana] sp\|Q9LF41.1\|UBE4_ARATH RecName: Full=Probable ubiquitin conjugation factor E4; AltName: Full=Plant U-box protein 1; AltName: Full=U-box domain-containing protein 1; AltName: Full=Ubiquitin-fu	-	-	57%
FL-Next	sp=Probable ubiquitin conjugation factor E4; Arabidopsis thaliana (Mouse-ear cress).	-	-	79%
Blast2go	probable ubiquitin conjugation factor e4-like	-	-	72%

Source	ECs	Term	Type	e value	Identity
Blast2go	Ubiquitin--protein ligase.	EC:6.3.2.19	-	0.0	72%

Source	GOs	Term	Type	e value	Identity
Blast2go	cellular protein metabolic process	GO:0044267	Biological Process	0.0	72%
Blast2go	ubiquitin-protein ligase activity	GO:0004842	Molecular Function	0.0	72%

Source	InterPros	Term	Type	e value	Identity
Sma3	U box domain	IPR003613	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9LF41

Fln msg: Distance to subject end: 127 aas, your sequence is shorter than subject: 119 - 1038

Fln protein: VRIDMTLANEDVGMLAYTSSIITAPFLLPELVERVANMLNYFLLQLVGPQRKTLTLKDPEKYEFRPKKLLKQIVEIYVHLARGDKENAFPLAISRDGRSYNDELFSAAAEVLQKIGEDI

Protein Length: 120

Fln nts: GTTCGTATTGACATGACATTGGCAAATGAGGATGTTGGGATGTTAGCTTACACATCTTCCATAATTACAGCACCATTTCTCCTTCCAGAACTGGTTGAAAGGGTAGCTAATATGCTCAATTATTTCTTGTTACAATTGGTGGGCCCTCAACGTAAAACTCTCACACTCAAGGATCCTGAAAAATATGAATTCAGACCAAAAAAACTGTTGAAGCAAATTGTTGAAATTTATGTGCACCTGGCTAGGGGAGATAAGGAGAATGCTTTTCCACTTGCTATATCAAGGGATGGTCGCTCTTATAATGATGAGTTATTTTCAGCTGCAGCCGAAGTCCTTCAAAAAATAGGTGAAGACATT

Fln Alignment:

Contig2190___VRIDMTLANEDVGMLAYTSSIITAPFLLPELVERVANMLNYFLLQLVGPQRKTLTLKDPEKYEFRPKKLLKQIVEIYVHLARGDKENAFPLAISRDGRSYNDELFSAAAEVLQKIGED
Q9LF41_________________VRIDMKLANEDVTMLAFTSEEITAPFLLPEMVERVANMLNYFLLQLVGPQRKSLSLKDPEKYEFRPKQLLKQIVRIYVNLARGDTVNIFPGAISSDGRSYNEQLFNAGADVLRRIGEE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain