SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene2185

Length: 340 nt

UniGene Fasta

>biog3_v1.0_unigene2185
CCAGAAAAGGTTGCAATCCAGATGAATGACACACATCCAACATTATCGGTACCTGAGTTGATGCGGATCTTGATTGACATGGAACGATCTGCCTTGGGAGAAAGCCTGGAATATTACTCAGAGAACAGTGGCATACACAAATCATACTGTGCTTCCTGAAGCATTGGAGAAGTGGCCTTTTGAGCTTATGCAAAAGCTTCTTCCAAGACACATGGAGATAATACGAACTATTGATGAGGAGTTCATCAAGGAAGTCATTGCCAAGAGTAATACGGTAGATCTTAAAGAATACAAAAAGAAGATCAGAGGAATGAGAATCCTACAAAATGATGACTACATT

Ace file of the UniGene biog3_v1.0_unigene2185

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8912	6/6

Source	Descriptions	Term	Type	Identity
AutoFact	Phosphorylase n=1 Tax=Populus trichocarpa RepID=B9H0D3_POPTR	-	-	70%
FL-Next	sp=Alpha-1,4 glucan phosphorylase L-1 isozyme, chloroplastic/amyloplastic; Solanum tuberosum (Potato).	-	-	82%
Blast2go	alpha- glucan phosphorylase l chloroplastic amyloplastic-like	-	-	82%

Source	ECs	Term	Type	e value	Identity
Blast2go	Phosphorylase.	EC:2.4.1.1	-	0.0	82%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Starch and sucrose metabolism	00500		0.0	82%

Source	GOs	Term	Type	Identity
Blast2go	response to water deprivation	GO:0009414	Biological Process	82%
Blast2go	carbohydrate metabolic process	GO:0005975	Biological Process	82%
Blast2go	response to temperature stimulus	GO:0009266	Biological Process	82%
Blast2go	identical protein binding	GO:0042802	Molecular Function	82%
Blast2go	phosphorylase activity	GO:0004645	Molecular Function	82%
Blast2go	pyridoxal phosphate binding	GO:0030170	Molecular Function	82%
Blast2go	amyloplast	GO:0009501	Cellular Component	82%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	82%

Source	InterPros	Term	Type	Identity
Sma3	Glycosyl transferase, family 35	IPR000811	-	-
Sma3	Cullin, N-terminal	IPR001373	-	-
Sma3	Amino acid-binding ACT	IPR002912	-	-
Sma3	Glycogen/starch/alpha-glucan phosphorylase	IPR011833	-	-
Sma3	Cullin homology	IPR016158	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: P04045

Fln msg: Separated hits, possible frame ERROR between 84 and 89, Distance to subject end: 475 aas, your sequence is shorter than subject: 114 - 966

Fln protein: PEKVAIQMNDTHPTLSVPELMRILIDMxxxLPWEKAWNITQRTVAYTNHTVLPEALEKWPFELMQKLLPRHMEIIRTIDEEFIKEVIAKSNTVDLKEYKKKIRGMRILQNDDYI

Protein Length: 115

Fln nts: CCAGAAAAGGTTGCAATCCAGATGAATGACACACATCCAACATTATCGGTACCTGAGTTGATGCGGATCTTGATTGACATGGAxxxxxxTCTGCCTTGGGAGAAAGCCTGGAATATTACTCAGAGAACAGTGGCATACACAAATCATACTGTGCTTCCTGAAGCATTGGAGAAGTGGCCTTTTGAGCTTATGCAAAAGCTTCTTCCAAGACACATGGAGATAATACGAACTATTGATGAGGAGTTCATCAAGGAAGTCATTGCCAAGAGTAATACGGTAGATCTTAAAGAATACAAAAAGAAGATCAGAGGAATGAGAATCCTACAAAATGATGACTACATT

Fln Alignment:

Contig2185___PEKVAIQMNDTHPTLSVPELMRILIDMExxLPWEKAWNITQRTVAYTNHTVLPEALEKWPFELMQKLLPRHMEIIRTIDEEFIKEVIAKSNTVDLKEYKKKIRGMRILQNDD
P04045_________________PEKVAVQMNDTHPTLCIPELMRILIDLKxxLNWNEAWNITQRTVAYTNHTVLPEALEKWSYELMQKLLPRHVEIIEAIDEELVHEIVLKYGSMDLNKLEEKLTTMRILENFD

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
292	50			50	1.0
293		50	50		1.0
294	50		50		1.0
295	50			50	1.0
296	50			50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain