SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene2181

Length: 383 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene2181
AATGTAGGGTTTATTCACATGAAGTGTTTACACAAATCTTGCGTGGTCTATCTGCTGCCAAAGTTACACGGCCAGGAAAGTTTCGCAGCAGTCAAGATGGTTATGCAGTCAGAGCATCACTTAAGGCTGAAGATGGAATCTTATATCCTCTGGAAAAGAGCTTTTTCTTCTTGCCTAAACCACCAACTCTTATTCTTCATGAAGAGATTGAATATCTTGAATTCGAGAGACATGGCACTGGTGGTGCTAGTAGTATATCTTCTCACTATTTTGATCTTATCATAAGACTGAAAAGTGAGCAAGAACACCAGTTCCGCAACATTCAACGTAATGAATATCATAATCTTTTCAACTTCATCAGGTGTGCAAATTCCCTATTATCT

Ace file of the UniGene biog3_v1.0_unigene2181 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1840	5/5

Source	Descriptions	Term	Type	Identity
AutoFact	RecName: Full=FACT complex subunit SSRP1; AltName: Full=Facilitates chromatin transcription complex subunit SSRP1; AltName: Full=Recombination signal sequence recognition protein 1 emb\|CAA66480.1\| transcription factor [Vicia faba var. minor]	-	-	70%
FL-Next	sp=FACT complex subunit SSRP1; Zea mays (Maize).	-	-	81%
Blast2go	fact complex subunit ssrp1	-	-	84%

Source	ECs	Term	Type	e value	Identity
Blast2go	2-alkenal reductase.	EC:1.3.1.74	-	0.0	84%

Source	GOs	Term	Type	Identity
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	84%
Blast2go	DNA repair	GO:0006281	Biological Process	84%
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	84%
Blast2go	DNA replication	GO:0006260	Biological Process	84%
Blast2go	vegetative to reproductive phase transition of meristem	GO:0010228	Biological Process	84%
Blast2go	2-alkenal reductase [NAD(P)] activity	GO:0032440	Molecular Function	84%
Blast2go	DNA binding	GO:0003677	Molecular Function	84%
Blast2go	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	84%
Blast2go	nuclear euchromatin	GO:0005719	Cellular Component	84%
Blast2go	FACT complex	GO:0035101	Cellular Component	84%

Source	InterPros	Term	Type	e value	Identity
Sma3		IPR000910	-	0.0	-
Sma3	Structure-specific recognition protein	IPR000969	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9LEF5

Fln msg: Distance to subject end: 199 aas, your sequence is shorter than subject: 127 - 639

Fln protein: CRVYSHEVFTQILRGLSAAKVTRPGKFRSSQDGYAVRASLKAEDGILYPLEKSFFFLPKPPTLILHEEIEYLEFERHGTGGASSISSHYFDLIIRLKSEQEHQFRNIQRNEYHNLFNFIRCANSLLS

Protein Length: 128

Fln nts: AATGTAGGGTTTATTCACATGAAGTGTTTACACAAATCTTGCGTGGTCTATCTGCTGCCAAAGTTACACGGCCAGGAAAGTTTCGCAGCAGTCAAGATGGTTATGCAGTCAGAGCATCACTTAAGGCTGAAGATGGAATCTTATATCCTCTGGAAAAGAGCTTTTTCTTCTTGCCTAAACCACCAACTCTTATTCTTCATGAAGAGATTGAATATCTTGAATTCGAGAGACATGGCACTGGTGGTGCTAGTAGTATATCTTCTCACTATTTTGATCTTATCATAAGACTGAAAAGTGAGCAAGAACACCAGTTCCGCAACATTCAACGTAATGAATATCATAATCTTTTCAACTTCATCAGGTGTGCAAATTCCCTATTATCT

Fln Alignment:

Contig2181___HEVFTQILRGLSAAKVTRPGKFRSSQDGYAVRASLKAEDGILYPLEKSFFFLPKPPTLILHEEIEYLEFERHGTGGASSISSHYFDLIIRLKSEQEHQFRNIQRNEYHNLFNFIRCAN
Q9LEF5_________________HEVFTKVLRGLSGAKVTRPGSFRSCQDGYAVKSSLKAEDGLLYPLEKGFFFLPKPPTLILHEEIEFVEFERHGAGGA-SISSHYFDLLVKLKNDQEHLFRNIQRNEYHNLFNFINGKN

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
90	25			75	0.996473
91	25			75	0.996473
93			25	75	0.996473
94		75		25	0.996473
162	75		25		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain