SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene2175

Length: 1539 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene2175 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene18538	62/62

Source	Descriptions	Term	Type	Identity
AutoFact	Ubiquitin-associated (UBA) protein [Arabidopsis thaliana] emb\|CAC00737.1\| putative protein [Arabidopsis thaliana] gb\|AAM63026.1\| unknown [Arabidopsis thaliana] gb\|AAO63279.1\| At3g56740 [Arabidopsis thaliana] dbj\|BAE99920.1\| hypothetical protein [Arabidops	-	-	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	protein	-	-	72%

Source	InterPros	Term	Type	Identity
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	-
Sma3	Ubiquitin-associated/translation elongation factor EF1B, N-terminal	IPR000449	-	-
Sma3	Enolpyruvate transferase domain	IPR001986	-	-
Sma3	Derlin	IPR007599	-	-
Sma3	Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote	IPR015940	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AE23

Fln msg:

Fln protein: MNAGPSGFQNAPVTKGLVLICGVVSIIAATQGRASFSSLSYQAIVKKLHLWRLVTSVFVFSSTSELMFGLYLLYYFRVFERQIGSNKYSVFILFATIFSTLFELMILVVFKDYISGGLAPGPYGIIVSLFVPFFLDIPVSTRFQIFSVRFSDKSFVYLAGLQLLLSSWKRSFIPGFCGVLAGLLYRMNIFRIQKLKLPKSVASTASWLFSPLVSGGSSTVSSRRTVTRETIDAPLGQQFQGNWVAPTMAESEAAISTLVSMGFDRSSAIRALAQARNDIHAAAELLLNSHSQ*

Protein Length: 294

Fln nts: ACGTCACAGAGCAAGAGCAACGAAGGTTTCAACCTTGTCCTTGTTGACGAGGAAAACGAGTCACCGGCCTGCATTTTCGAAGAACTGACACCGGCGTTCGTTAATTCCTCCATCCCTGCATCGCGGATCTGCATCTTTACCACCAATTTATCCATTAGTCTCCTTCTATTTCTGACAAAATTCAATTAAA_-_ATGAACGCCGGACCGTCTGGATTTCAGAATGCTCCTGTGACGAAGGGTTTGGTACTTATTTGTGGCGTAGTCTCAATTATAGCTGCCACTCAGGGCCGAGCATCCTTCTCCAGCCTTTCTTATCAGGCAATTGTGAAGAAGCTTCACCTTTGGAGATTGGTCACATCTGTGTTTGTATTTTCATCAACCTCAGAGTTGATGTTTGGACTCTACCTGTTGTACTATTTTAGAGTTTTTGAGAGACAAATTGGATCAAACAAATATTCAGTTTTTATCCTATTTGCAACAATTTTCTCAACACTCTTTGAGTTAATGATTTTGGTGGTATTCAAAGATTATATATCAGGTGGACTAGCTCCTGGACCTTATGGCATAATAGTTTCTCTCTTTGTTCCCTTCTTTCTTGACATACCAGTTTCAACGCGGTTTCAAATTTTTAGTGTCCGGTTCTCTGATAAGTCATTTGTCTACCTTGCTGGACTTCAACTTCTCCTTTCATCATGGAAGAGATCCTTTATACCAGGGTTTTGTGGAGTACTTGCTGGCTTATTATATCGAATGAACATTTTTAGAATTCAAAAATTAAAGCTTCCTAAATCGGTAGCATCTACTGCTTCGTGGCTTTTTTCTCCATTAGTCTCTGGAGGGTCATCTACCGTTTCCTCAAGAAGAACTGTCACAAGAGAGACAATAGATGCTCCGTTGGGTCAACAATTTCAGGGTAACTGGGTTGCACCTACGATGGCTGAATCAGAGGCAGCCATTTCGACTCTAGTTTCGATGGGTTTTGATAGGAGTTCAGCTATACGAGCACTCGCACAAGCAAGAAATGACATCCATGCTGCAGCAGAACTACTTCTTAATAGTCACTCACAGTAA___ATATTAAGAGTTGTTTATTTGCTTTTGTAGGGATTTTTTTAAATGACTTGTAGATGGACAAATTCATGCATATTAAGGCGTTTAAAGATCTTTTAATCTTGTAATTCTTGTCTTCAGTTTTTTGTTCTAGATGCAAAAAGGATGTAGGCCCTTTATTGAGATGAGTTCCTGCTTTCTCTTTGAATTATCCAATCTGTACAGACTGCAGAAAGTGACCTAGGGATGTAAATTTTCCTTTATCATTGAGGCCAAGGTTCCTGTGCAGGGCTATTCATTAGAGGTCCTGTTGGGCATGCTTTCCAAGAATACCATGGATTCCAAACATGTAATTACCTTCTATAACTGTGTGTGCCTAACACTTCATGCTGCACACCTTTAATGGACTGAACATAGGCTGAATCTTGGTGAATCGGAGATAATAGTAATTATGCACAAATAAGTGAAGAAGGGAAGACAGCTCTGACTATTTA

Fln Alignment:

Contig2175___MNAGPSGFQNAPVTKGLVLICGVVSIIAATQGRASFSSLSYQAIVKKLHLWRLXXXXXXXXXXSELMFGLYLLYYFRVFERQIGSNKYSVFILFATIFSTLFELMILVVFKDYISGGLAPGPYGIIVSLFVPFFLDIPVSTRFQIFSVRFSDKSFVYLAGLQLLLSSWKRSFIPGFCGVLAGLLYRMNIFRIQKLKLPKSVASTASWLFSPLXXXXXXXXXXXXXXXRETIDAPLGQQFQGNWVAPTMAESEAAISTLVSMGFDRSSAIRALAQARNDIHAAAELLLNSHSQ
D5AE23_________________MNAGPSGFQNAPVTKGLVFICGIASIIAATQGRASFSSLSYQAIVKKLHLWRLVTSVFVFSSTSELMFGLYLLYYFRVFERQIGSNKYSVFILFATIFSTLFELMILVLFKDSISGGLAPGPYGIIVSLFVPFFLDIPVSTRFQIFSVRFSDKSFVYLAGLQLLLSSWKRSLIPGFCGVLAGLLYRMNIFRIQRIKLPKLVASTASWLFAPLVSGGSSTISSRRTATRETIDAPLGQQFQGNLVAPTMAESEEAISALVSMGFDRSSAIRALAQARNDINAAADLLLNSHSQ

SNPs (tot: 43)

Position	A %	C %	G %	T %	Probability
176	20	80			0.995493
180		80		20	0.995493
288			16	83	0.994512
289		83		16	0.994512
303	33		66		1.0
304	66	33			1.0
306		66		33	1.0
321	16		83		0.994512
322	16		83		0.994512
323		83		16	0.994512
324		83	16		0.994512
332	14			71	0.984337
333	14			85	0.993533
335			14	85	0.993533
349	83	16			0.994512
351	33			16	1.0
352	83			16	0.994512
384	20	80			0.995493
400	85			14	0.993533
449	75			25	0.996473
451		75		25	0.996473
739		83		16	0.994512
741			83	16	0.994512
799	75		25		0.996473
830	16			83	0.994512
831			83	16	0.994512
1056	11		88		0.923564
1058			88	11	0.923564
1059	88		11		0.923564
1060	88			11	0.923564
1076		14	85		0.993533
1079	83			16	0.994512
1121	33			66	0.997452
1125	66			33	0.997452
1252	16		83		0.994512
1255		83		16	0.994512
1281		16	83		0.994512
1283		83		16	0.994512
1330	85	14			0.993533
1333		85		14	0.993533
1339		16	83		0.994512
1340	16		83		0.994512
1342		83		16	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain