SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene2166

Length: 1449 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene2166

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1278	32/32

Source	Descriptions	Term	Type	Identity
AutoFact	Putative RNA-binding protein n=1 Tax=Solanum lycopersicum RepID=B1N661_SOLLC	-	-	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	30%
Blast2go	zinc finger ccch domain-containing protein 40-like	-	-	83%

Source	GOs	Term	Type	Identity
Blast2go	zinc ion binding	GO:0008270	Molecular Function	83%
Blast2go	nucleotide binding	GO:0000166	Molecular Function	83%
Blast2go	RNA binding	GO:0003723	Molecular Function	83%

Source	InterPros	Term	Type	Identity
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	Zinc finger, CCCH-type	IPR000571	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: C0PT30

Fln msg: STOP codon was not found. Distance to subject end: 63 aas, atg_distance in limit (1-15): atg_distance = 12, Unexpected STOP codon in 5 prime region,

Fln protein: MAHRLLRDTEADGWERSDFPIICESCLGDNPYVRMTKANFDKECKICTRPFTVFRWRPGRDARYKKTEVCQTCCKLKNVCQVCLLDLEYGLPVQVRDTALAINSNEAIPRSDVNREYFAEEQDRKARAGIDYESSYGKVRPNDTILKLQRTTPYYRRNRAHVCSFYVRGECTRGAECPYRHEMPITGELSQQNIKDRYYGVNDPVAARLLNKAGEMPSLVPPEDESIKTLYVGGLDSRVTEADLKDNFYAYGEIESIRLVFQRACAFVTYTTREGAEKAAENLSNKLVIKGLRLKLLWGKPQAPKPEVENQGDEAAKIISGMLPRAVVSQHQSQQQPQNSQEQPSLNYFNIPPPPPPSERTYYPSMDPQRMGAVAPAQEPGSSKQGTANEVQEGQHSQPAPHGPPDGSYYGSQQAQEVNIITIT

Protein Length: 425

Fln nts: GATTCCCCTTTCTTTTACTGAACTGTGGCTCGCTTCGATCGACAGAATTTTATCCCCAAAACATTTTGTCACTTGTGCGGAGCCAAATTCGGTCCGTGTAGATAAATATTGATTAAATCACAGGGAAGAGAGGAGGGTCTGGGCAGCAGAGGAATACAGGCGACAGGTAAGGAGG_-_ATGGCTCACAGACTGCTTAGAGACACAGAGGCCGATGGCTGGGAGCGCTCTGATTTCCCCATTATATGCGAGTCCTGCCTCGGTGATAACCCTTACGTGCGAATGACGAAGGCAAATTTTGACAAAGAGTGTAAAATTTGCACCAGACCATTTACAGTTTTCAGGTGGAGACCAGGCCGTGATGCAAGGTACAAGAAAACAGAGGTTTGCCAAACATGCTGTAAACTCAAAAACGTTTGTCAGGTGTGTCTGCTTGATCTCGAATATGGATTGCCAGTCCAAGTTCGAGATACAGCCTTGGCCATTAACTCCAATGAGGCCATTCCGAGGAGTGATGTTAATAGAGAGTATTTTGCTGAGGAACAAGATCGCAAGGCTAGAGCAGGAATAGACTATGAATCATCATATGGAAAGGTCCGTCCAAATGATACGATATTGAAGCTTCAAAGGACAACACCATATTACAGAAGGAACCGTGCTCATGTATGTAGTTTTTATGTTCGTGGTGAGTGTACACGTGGTGCTGAATGTCCATACCGGCATGAGATGCCTATAACAGGGGAGCTTTCTCAGCAGAATATAAAAGATCGATATTATGGAGTAAATGATCCAGTTGCAGCAAGGTTGTTGAATAAAGCTGGTGAGATGCCATCTCTTGTTCCTCCTGAAGATGAGAGTATAAAGACTCTGTATGTGGGTGGGCTTGATTCAAGGGTTACTGAAGCTGATCTTAAGGACAATTTTTACGCATATGGTGAAATTGAGTCTATCAGACTTGTCTTTCAAAGAGCATGTGCATTTGTTACATATACAACCAGAGAAGGGGCTGAGAAAGCAGCAGAGAATTTGTCCAACAAGCTAGTTATAAAAGGCTTGAGATTAAAGCTGTTGTGGGGAAAGCCACAGGCTCCTAAACCAGAAGTTGAGAATCAAGGAGATGAAGCTGCAAAAATTATTAGTGGTATGCTTCCAAGAGCTGTTGTTTCACAGCACCAAAGCCAACAGCAGCCACAGAACAGTCAGGAACAGCCTTCTCTAAATTACTTCAATATTCCTCCTCCGCCCCCACCATCAGAAAGGACATACTATCCATCCATGGATCCTCAAAGAATGGGAGCTGTTGCTCCAGCACAAGAGCCTGGCAGCAGTAAACAAGGCACAGCAAATGAAGTGCAGGAGGGTCAACATTCTCAACCGGCTCCACATGGGCCTCCAGATGGTTCCTATTATGGATCACAACAGGCTCAAGAGGTCAATATCATCACTATTACGGG

Fln Alignment:

Contig2166___GVNDPVAARLLNKAGEMPSLVPPEDESIKTLYVGGLDSRVTEADLKDNFYAYGEIESIRLVFQRACAFVTYTTREGAEKAAENLSNKLVIKGLRLKLLWGKPQAPKPEVENQGDE
C0PT30_________________GVQHQYSGRAGNGGSHAQGFPSDNDLNNTTIFVGRLDPNATDEDLRQVFGQYGELVSVKIPVGKGCGFVQFGNRASAEEALQRL-HGTVIRQQTVRLSWGRSPANKQQPQPQGQQ

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
196	33		66		0.997452
198			66	33	0.997452
199	66		33		0.997452
200		66		33	0.997452
419	25		75		1.0
420	25		75		1.0
597	11	77		11	0.968132
601	88			11	0.923564
617		12	87		0.992554
618	12	87			0.992554
1023	33			66	1.0
1024	33			66	1.0
1159		16	83		0.994512
1160	16			83	0.994512
1287	75			25	0.996473
1344	75	25			0.996473
1347			75	25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain