SustainPineDB

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Assembly info
Unigenes
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SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene2084

Length: 388 nt

UniGene Fasta

>biog3_v1.0_unigene2084
ATCGATAGCTCTCAGCAATACTAGTATACTTATGGGATGCCTCCAAGAGCGCAACTTCTGAGCTCTTGACCGTCGATGATGATGTTGGTCCAATAACAAGTGTTAAATGGGCACCTGATGGAAGACATATTGGTGTTGGCCTGACTAATTCCGTTGTACAACTATGGGACTCTGCATCTAATAAACAGTTAAGGGCCTTGAAAGGTCACCATGCCCGTGTGGGTGCGCTTGCTTGGAATGGGCACATTCTTACTACTGGTAGCCTTGATGGTTTAATATTAAATCATGATGTCCGCATCCGTGATTCCATTGTTCAAACATATAGAGGACATGAGCAGGAAGTGTGTGGTTTGACATGGTCTATGTCTGGCCAGCAGCTTGCAAGTGG

Ace file of the UniGene biog3_v1.0_unigene2084

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6219	6/6

Source	Descriptions	Term	Type	Identity
AutoFact	Cell division cycle, putative n=1 Tax=Ricinus communis RepID=B9S1Y4_RICCO	-	-	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	44%
Blast2go	cell division cycle cofactor of apc complex	-	-	84%

Source	GOs	Term	Type	Identity
Blast2go	signal transduction	GO:0007165	Biological Process	84%
Blast2go	cell division	GO:0051301	Biological Process	84%
Blast2go	signal transducer activity	GO:0004871	Molecular Function	84%
Blast2go	heterotrimeric G-protein complex	GO:0005834	Cellular Component	84%

Source	InterPros	Term	Type	Identity
Sma3	WD40 repeat	IPR001680	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LPX8

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 165 aas, your sequence is shorter than subject: 128 - 508

Fln protein: R*LSAILVYLWDASKSATSELLTVDDDVGPITSVKWAPDGRHIGVGLTNSVVQLWDSASNKQLRALKGHHARVGALAWNGHILTTGSLDGLILNHDVRIRDSIVQTYRGHEQEVCGLTWSMSGQQLAS

Protein Length: 129

Fln nts: ATCGATAGCTCTCAGCAATACTAGTATACTTATGGGATGCCTCCAAGAGCGCAACTTCTGAGCTCTTGACCGTCGATGATGATGTTGGTCCAATAACAAGTGTTAAATGGGCACCTGATGGAAGACATATTGGTGTTGGCCTGACTAATTCCGTTGTACAACTATGGGACTCTGCATCTAATAAACAGTTAAGGGCCTTGAAAGGTCACCATGCCCGTGTGGGTGCGCTTGCTTGGAATGGGCACATTCTTACTACTGGTAGCCTTGATGGTTTAATATTAAATCATGATGTCCGCATCCGTGATTCCATTGTTCAAACATATAGAGGACATGAGCAGGAAGTGTGTGGTTTGACATGGTCTATGTCTGGCCAGCAGCTTGCAAGTGG

Fln Alignment:

Contig2084___VYLWDASKSATSEL--LTVDDDVGPITSVKWAPDGRHIGVGLTNSVVQLWDSASNKQLRALKGHHARVGALAWNGHILTTGSLDGLILNHDVRIRDSIVQTYRGHEQEVCGLTWSMSGQQLAS
B8LPX8_________________VYLWSACTSKVTKLCDLGVNDSV---CSVGWTPQGTHLAVGTNIGEIQIWDASRCKKVRTMGGHCTRAGALAWSSYILSSGSRDRNILHRDIRVQDDFVRKLVGHKSEVCGLKWSYDDRELAS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain