SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene2063

Length: 946 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene2063 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene27281	5/10
SustainPine v2.0	sp_v2.0_unigene28225	4/10
SustainPine v2.0	sp_v2.0_unigene77573	1/10

Source	Descriptions	Term	Type	Identity
AutoFact	Ubiquitin-protein ligase, putative n=1 Tax=Ricinus communis RepID=B9SG36_RICCO	-	-	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	49%
Blast2go	u-box domain-containing protein 4-like	-	-	72%

Source	InterPros	Term	Type	Identity
Sma3	Armadillo	IPR000225	-	-
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	-
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	ThiJ/PfpI	IPR002818	-	-
Sma3	U box domain	IPR003613	-	-
Sma3	Cyclin, C-terminal	IPR004367	-	-
Sma3		IPR006670	-	-
Sma3	Cyclin, N-terminal	IPR006671	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	Cyclin-like	IPR013763	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PSB5

Fln msg: your sequence is shorter than subject: 288 - 497

Fln protein: EDLESTSTELQRKAAAQLRLYAKNNMENRIMIANVGAVKPLVSLLHSVDPLTQENAVTALLNLSLYENNKFEITEAGAIKPLIHVLKSGTSTAKENAACTLLSLSLIEDNKVTIGASGAIPPLVALLINGSLRGKKDAATTLYTLSSLRENKERAIRAGVIRPLVDLMAEPSTGMVDKSAVLLGNLASIPEGKTVIVDEGGIPVLVEVVEVGSPRGKEHATATLLQLCEDSYLHRTLVLREGAIPPLVALSQSGTTRAKQKAVTLLQYLREPRQGSLRAQHSDFSLT*

Protein Length: 289

Fln nts: TAGAAGATTTGGAATCAACATCAACTGAGTTGCAGAGGAAGGCAGCAGCACAGTTGAGGTTATATGCGAAAAATAACATGGAAAATAGGATTATGATAGCTAATGTAGGGGCTGTAAAGCCTTTAGTATCATTGTTACATTCTGTGGATCCTCTAACACAGGAAAATGCAGTCACTGCTCTGTTGAATTTGTCTCTTTATGAAAACAACAAGTTCGAAATAACAGAAGCTGGAGCTATCAAGCCTCTTATACATGTACTAAAGTCAGGAACATCAACAGCTAAAGAGAATGCAGCTTGTACCCTTTTGAGTCTGTCACTCATAGAGGATAATAAGGTTACAATAGGAGCCTCCGGTGCGATTCCTCCCTTGGTAGCTCTGCTTATTAATGGTTCCTTAAGAGGGAAAAAAGATGCAGCTACAACCCTTTACACTCTTTCCTCTCTTCGGGAGAATAAGGAGAGAGCCATCCGTGCAGGTGTAATCAGACCACTTGTGGATCTCATGGCAGAACCTTCCACTGGTATGGTGGATAAATCGGCAGTTCTGCTCGGCAACCTTGCAAGCATTCCTGAAGGAAAAACTGTCATTGTCGATGAAGGAGGCATACCTGTCTTGGTGGAAGTAGTGGAGGTGGGTTCTCCAAGAGGAAAGGAACATGCGACTGCAACACTTCTACAACTCTGTGAAGACAGTTACCTCCATCGTACTTTAGTATTACGCGAAGGGGCGATACCTCCTCTGGTTGCATTGTCACAGTCAGGCACAACGCGGGCAAAACAAAAGGCCGTGACTCTTCTTCAGTACTTACGGGAACCAAGACAAGGGAGCCTTAGAGCGCAGCACTCGGATTTTTCGTTAACTTGA___TCAGGAACTCTGAGGGGCAAACTCCCCACCGTGACATAAAGATTGTAACGTTCTGAGTAACGGGTTGTAAATATGAATAG

Fln Alignment:

Contig2063___EDLESTSTELQRKAAAQLRLYAKNNMENRIMIANVGAVKPLVSLLHSVDPLTQENAVTALLNLSLYENNKFEITEAGAIKPLIHVLKSGTSTAKENAACTLLSLSLIEDNKVTIGASGAIPPLVALLINGSLRGKKDAATTLYTLSSLRENKERAIRAGVIRPLVDLMAEPSTGMVDKSAVLLGNLASIPEGKTVIVDEGGIPVLVEVVEVGSPRGKEHATATLLQLCEDSYLHRTLVLREGAIPPLVALSQSGTTRAKQKAVTLLQYL
C0PSB5_________________QQLYSRQIDVQRAAAEEIRLLAKRNADNRLLIAEAGAIPQLVKLLSSTDMKTQEHAVTALLNLSIHSSNKGFIVQAGAINRIIDVLKHGSTEARENAAATLFSLSVVDENKVIIGASGAIPPLVDLLRDGTVRGKKDAATAIFNLSIYQGNKFRAVRAGVVPPLIALLVDQSIGMVDEALAILAILATHQEGRIAIGQQSAIDILVELIHSGSARNKENAAAVLLALGMNDSSHLLAAMQLGVFEYLIELAQNGTARARRKARGLLDLI

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
763			20	80	0.995493
764		80		20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain