SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene2058

Length: 372 nt

UniGene Fasta

>biog3_v1.0_unigene2058
AATGTTGATTGAAATCAAATTCCGTACGAAAGATCTGCTTGAATGCATGCATAGGCTTGATCCGAATCTCATTTCACTTAAGATTAAGTTACAGGAAGCCAAGGATGATCATCCCGGGGCTGAAGTAATACGACAGCAAATTAAAGCTCGGGAAAAACAGCTGCTTCCTTTTTATAAGCAGATTGCCATCAGATTTGCTGAGTTGCATGACACGTCCTTCAGAATGGCAGCAAAAGGGGTTGTGAAAAAAGTTCTAAAATGGGAAGACTCACGAATCTTTTTCTACAAGAGATTGAACCGAAGATTAACAGAGTCTTCTTTGATTAAGGATGTAAGAGATGCTTCTGGAAACAAACTATCTCATAAATCAGC

Ace file of the UniGene biog3_v1.0_unigene2058

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene635	10/10

Source	Descriptions	Term	Type	Identity
AutoFact	Acetyl-CoA carboxylase n=7 Tax=rosids RepID=D2CFN2_9ROSI	-	-	71%
FL-Next	sp=Acetyl-CoA carboxylase 1; Arabidopsis thaliana (Mouse-ear cress).	-	-	69%
Blast2go	acetyl- carboxylase	-	-	83%

Source	ECs	Term	Type	e value	Identity
Blast2go	Biotin carboxylase.	EC:6.3.4.14	-	0.0	83%

Source	KEGGs	Term	Type	Identity
Blast2go	Fatty acid biosynthesis	00061		83%
Blast2go	Metabolic pathways	01100		83%
Blast2go	Acetyl-CoA carboxylase.	EC:6.4.1.2	-	83%

Source	KEGGs	Term	Identity
Blast2go	Fatty acid biosynthesis	00061	83%
Blast2go	Tetracycline biosynthesis	00253	83%
Blast2go	Pyruvate metabolism	00620	83%
Blast2go	Propanoate metabolism	00640	83%
Blast2go	Carbon fixation pathways in prokaryotes	00720	83%
Blast2go	Metabolic pathways	01100	83%
Blast2go	Biosynthesis of secondary metabolites	01110	83%

Source	GOs	Term	Type	Identity
Blast2go	fatty acid biosynthetic process	GO:0006633	Biological Process	83%
Blast2go	ATP binding	GO:0005524	Molecular Function	83%
Blast2go	biotin carboxylase activity	GO:0004075	Molecular Function	83%
Blast2go	acetyl-CoA carboxylase activity	GO:0003989	Molecular Function	83%

Source	InterPros	Term	Type	Identity
Sma3	Carboxyl transferase	IPR000022	-	-
Sma3	Biotin/lipoyl attachment	IPR000089	-	-
Sma3	Biotin-binding site	IPR001882	-	-
Sma3	Carbamoyl-phosphate synthetase, large subunit, ATP-binding	IPR005479	-	-
Sma3	Carbamoyl-phosphate synthase, large subunit, N-terminal	IPR005481	-	-
Sma3	Biotin carboxylase, C-terminal	IPR005482	-	-
Sma3	ATP-grasp fold	IPR011761	-	-
Sma3	Acetyl-coenzyme A carboxyltransferase, N-terminal	IPR011762	-	-
Sma3	Acetyl-coenzyme A carboxyltransferase, C-terminal	IPR011763	-	-
Sma3	Biotin carboxylation domain	IPR011764	-	-
Sma3	Acetyl-CoA carboxylase, central domain	IPR013537	-	-
Sma3	ATP-grasp fold, subdomain 2	IPR013816	-	-
Sma3		IPR013817	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	Peroxidase, active site	IPR019794	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q38970

Fln msg: Distance to subject end: 93 aas, your sequence is shorter than subject: 123 - 2254

Fln protein: MLIEIKFRTKDLLECMHRLDPNLISLKIKLQEAKDDHPGAEVIRQQIKAREKQLLPFYKQIAIRFAELHDTSFRMAAKGVVKKVLKWEDSRIFFYKRLNRRLTESSLIKDVRDASGNKLSHKS

Protein Length: 124

Fln nts: AATGTTGATTGAAATCAAATTCCGTACGAAAGATCTGCTTGAATGCATGCATAGGCTTGATCCGAATCTCATTTCACTTAAGATTAAGTTACAGGAAGCCAAGGATGATCATCCCGGGGCTGAAGTAATACGACAGCAAATTAAAGCTCGGGAAAAACAGCTGCTTCCTTTTTATAAGCAGATTGCCATCAGATTTGCTGAGTTGCATGACACGTCCTTCAGAATGGCAGCAAAAGGGGTTGTGAAAAAAGTTCTAAAATGGGAAGACTCACGAATCTTTTTCTACAAGAGATTGAACCGAAGATTAACAGAGTCTTCTTTGATTAAGGATGTAAGAGATGCTTCTGGAAACAAACTATCTCATAAATCAGC

Fln Alignment:

Contig2058___IEIKFRTKDLLECMHRLDPNLISLKIKLQEAKDDHPGA--EVIRQQIKAREKQLLPFYKQIAIRFAELHDTSFRMAAKGVVKKVLKWEDSRIFFYKRLNRRLTESSLIKDVRDASGNKLSHKS
Q38970_________________IEIKFRTKELLECMGRLDQKLISLKAKLQDAKQSEAYANIELLQQQIKAREKQLLPVYIQIATKFAELHDTSMRMAAKGVIKSVVEWSGSRSFFYKKLNRRIAESSLVKNVREASGDNLAYKS

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
4	25		75		0.996473
5	25			75	0.996473
70	20	80			0.995493
73			20	80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain