SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene2042

Length: 388 nt

UniGene Fasta

>biog3_v1.0_unigene2042
AATGTAGATAGGAAGGTTATTGGAACAGAAGCATCCAGGTTGTGTTTGGAGGGTCCATGGATCACTAAATCTTATCTGGAAATGATTATGGCAAAGCAAGGTGTTCCACGTTTAAGTACACCTCCACTTCCTTCAGCATACTTTGGGGCTTCACCTTCAGTCCCTTCAAATGTTTCAGACAGGGCTATCATTTCTCCTCGTCCAGTCAGGTTAAGGCCAGTACCTTCTCGCAAGATGCCTGATATGGCAGAGCCTTGGACCAGATCTCCAACAAAATCTGAGATGGAGCCTGTGGTTGCATCATGGCATGTAGTCAACACTTTAGGGTCAGTAGAGAATTCCGTAAATACCTTTGCAGATTCTTCTGCTTTCAGGGATGCTATACATT

Ace file of the UniGene biog3_v1.0_unigene2042

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9218	3/3

Source	Descriptions	Term	Type	e value	Identity
AutoFact	adenylate cyclase domain-containing protein [Dictyostelium discoideum AX4] sp\|Q54R62.1\|UCKC_DICDI RecName: Full=Uridine-cytidine kinase C; AltName: Full=Cytidine monophosphokinase C; AltName: Full=Uridine monophosphokinase C gb\|EAL65762.1\| adenylate cycla	-	-	1.0e-09	30%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	0.0	48%
Blast2go	p-loop containing nucleoside triphosphate hydrolase-like protein	-	-	0.0	71%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring phosphorous-containing groups, Phosphotransferases with an alcohol group as acceptor.	EC:2.7.1.-	-	0.0	71%

Source	KEGGs	Term	Identity
Blast2go	Pentose phosphate pathway	00030	71%
Blast2go	Lipopolysaccharide biosynthesis	00540	71%
Blast2go	Nicotinate and nicotinamide metabolism	00760	71%
Blast2go	Metabolic pathways	01100	71%

Source	GOs	Term	Type	Identity
Blast2go	nucleoside monophosphate biosynthetic process	GO:0009124	Biological Process	71%
Blast2go	heterocycle biosynthetic process	GO:0018130	Biological Process	71%
Blast2go	phosphorylation	GO:0016310	Biological Process	71%
Blast2go	phosphotransferase activity, alcohol group as acceptor	GO:0016773	Molecular Function	71%
Blast2go	ATP binding	GO:0005524	Molecular Function	71%
Blast2go	kinase activity	GO:0016301	Molecular Function	71%

Source	InterPros	Term	Type	Identity
Sma3	Uridine kinase	IPR000764	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Phosphoribulokinase/uridine kinase	IPR006083	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9HJB7

Fln msg: Distance to subject end: 43 aas, your sequence is shorter than subject: 129 - 516

Fln protein: NVDRKVIGTEASRLCLEGPWITKSYLEMIMAKQGVPRLSTPPLPSAYFGASPSVPSNVSDRAIISPRPVRLRPVPSRKMPDMAEPWTRSPTKSEMEPVVASWHVVNTLGSVENSVNTFADSSAFRDAIH

Protein Length: 130

Fln nts: AATGTAGATAGGAAGGTTATTGGAACAGAAGCATCCAGGTTGTGTTTGGAGGGTCCATGGATCACTAAATCTTATCTGGAAATGATTATGGCAAAGCAAGGTGTTCCACGTTTAAGTACACCTCCACTTCCTTCAGCATACTTTGGGGCTTCACCTTCAGTCCCTTCAAATGTTTCAGACAGGGCTATCATTTCTCCTCGTCCAGTCAGGTTAAGGCCAGTACCTTCTCGCAAGATGCCTGATATGGCAGAGCCTTGGACCAGATCTCCAACAAAATCTGAGATGGAGCCTGTGGTTGCATCATGGCATGTAGTCAACACTTTAGGGTCAGTAGAGAATTCCGTAAATACCTTTGCAGATTCTTCTGCTTTCAGGGATGCTATACATT

Fln Alignment:

Contig2042___DRKVIGTEASRLCLEGPWITKSYLEMIMAKQGVPRLSTPPLPSAYFGASPSVPSNVSDRAIIXXXXXXXXXXXXXKMPDMAEPWTRSPTKSEMEPVVASWHVVNTLGS-----VENSVNTFADSSAFRD
B9HJB7_________________DRKTVGAEAMRIGVNGPWITKSYLELILERKGVPRLNTPPLL-----PNTSTTSN-QERAIVAPRPIRTTPNLVNRLEDLSQPWTRSPTKSKMEPMVETWHFTSSDTSHGSSVIEVSHEATTDSSTCRD

SNPs (tot: 3)

Position	A %	C %	T %	Probability
316	33		66	0.997452
319	66		33	0.997452
320		66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain