SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene2028

Length: 425 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene2028
AATGTAGGAGATAAACTTATATTGGCAGATATCTTTCTTGTCCCACAAGTTTACAATGCAAGAAGTTACAATGTTGACATGTCAAAGTTCCCAACTTTGAATAGGATCGACCAAGCATTAGCAGAACTGCCAGAATTCCAGGCTGCTGTGCCTGAGAGACAACCTGATGCAAAAGCATGATTTGACATAGTTTGTCAGTATAAACTTGAGAATTTCAACTCTATATTTGCATAAGTTTTATCATATTTCATATGTCCCTCCAAGCATTAATACTCTTAGTCGTTTGAGAGGGATTCTTATATGACATATTGATTTCTATTAATCTTGAAATTAATACTAGCAGTAATTTATTTAATTGATAGCGGGGACTGTCAACTAAAATAGTGCTAAAGCAGAACAGAAATTTCTTAGACTTTTAAAACATT

Ace file of the UniGene biog3_v1.0_unigene2028 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene33502	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	Glutathione S-transferase zeta class n=1 Tax=Pinus brutia RepID=D2XZY3_9CONI	-	-	96%
FL-Next	tr=Glutathione S-transferase zeta class; Pinus brutia.	-	-	94%
Blast2go	glutathione s-transferase-like protein	-	-	80%

Source	InterPros	Term	Type	Identity
Sma3	Glutathione S-transferase, C-terminal-like	IPR010987	-	-
Sma3	Glutathione S-transferase, N-terminal	IPR004045	-	-
Sma3	Glutathione S-transferase/chloride channel, C-terminal	IPR017933	-	-
Sma3	Glutathione S-transferase, C-terminal	IPR004046	-	-
Sma3	Maleylacetoacetate isomerase	IPR005955	-	-
Sma3		IPR012335	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D2XZY3

Fln msg: your sequence is shorter than subject: 60 - 226

Fln protein: NVGDKLILADIFLVPQVYNARSYNVDMSKFPTLNRIDQALAELPEFQAAVPERQPDAKA*

Protein Length: 61

Fln nts: AATGTAGGAGATAAACTTATATTGGCAGATATCTTTCTTGTCCCACAAGTTTACAATGCAAGAAGTTACAATGTTGACATGTCAAAGTTCCCAACTTTGAATAGGATCGACCAAGCATTAGCAGAACTGCCAGAATTCCAGGCTGCTGTGCCTGAGAGACAACCTGATGCAAAAGCATGA___TTTGACATAGTTTGTCAGTATAAACTTGAGAATTTCAACTCTATATTTGCATAAGTTTTATCATATTTCATATGTCCCTCCAAGCATTAATACTCTTAGTCGTTTGAGAGGGATTCTTATATGACATATTGATTTCTATTAATCTTGAAATTAATACTAGCAGTAATTTATTTAATTGATAGCGGGGACTGTCAACTAAAATAGTGCTAAAGCAGAACAGAAATTTCTTAGACTTTTAAAACATT

Fln Alignment:

Contig2028___NVGDKLILADIFLVPQVYNARSYNVDMSKFPTLNRIDQALAELPEFQAAVPERQPDAKA
D2XZY3_________________SIGDKLTLADIFLVPQVYNARSYNVDMSKFPTLNRIDQALAELPEFQAAVPERQPDAKA

SNPs (tot: 4)

Position	A %	G %	T %	Probability
110	33	66		0.997452
111	66		33	0.997452
112	66	33		0.997452
113	66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain