SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene1999

Length: 1052 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene1999 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene749	5/5

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Oryza sativa subsp. indica (Rice).	-	-	66%
Blast2go	uncharacterized protein	-	-	76%

Source	GOs	Term	Type	e value	Identity
Blast2go	mitochondrion	GO:0005739	Cellular Component	0.0	76%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B8AEH7

Fln msg: Separated hits, possible frame ERROR between 544 and 984, Distance to subject end: 348 aas, your sequence is shorter than subject: 351 - 554

Fln protein: AWTQGIITKKESYTTKEIWVGKIPRQWGKPWERMQPTTEIDSKLLKHHRTKDRRWWRAQAVRYLMRFKSEYTCKLLNIARHQAFGMKAAKMVLQTLPPEWPKVDISGSESEIERYVWSNHKPWVPQPLLSIHVRLGDKAAEMNLVSFKGYMNLAQRIRRHFPDVQNIWLSTEMQEVIDQTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxFQMTRRVQRDLWLHQHPRNCHES

Protein Length: 352

Fln nts: TGCATGGACACAAGGCATTATAACAAAGAAAGAAAGTTATACTACAAAGGAAATCTGGGTTGGCAAGATACCAAGACAATGGGGTAAACCTTGGGAGAGGATGCAGCCAACGACTGAGATAGACAGCAAATTACTTAAGCATCATCGAACAAAAGATAGGAGATGGTGGCGAGCACAGGCAGTGCGCTATCTGATGAGATTTAAAAGTGAATACACATGCAAATTGTTAAATATTGCCCGCCATCAAGCATTTGGAATGAAGGCTGCAAAAATGGTTCTTCAAACATTGCCTCCTGAGTGGCCAAAGGTTGATATTTCAGGGTCTGAATCAGAGATTGAACGCTATGTCTGGTCTAATCATAAGCCTTGGGTTCCACAACCTCTTTTGAGCATACATGTAAGACTTGGTGACAAAGCAGCAGAAATGAACTTAGTGTCTTTTAAAGGCTACATGAATCTTGCACAACGAATTCGCAGGCATTTTCCAGATGTTCAAAATATTTGGCTATCTACAGAGATGCAGGAAGTCATCGACCAGACAAAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxCTTCCAAATGACTAGGCGTGTACAGCGGGATCTATGGCTGCATCAGCATCCAAGAAACTGCCATGAGTCT

Fln Alignment:

Contig1999___GIITKKESYTTKEIWVGKIPRQWGKPWERMQPTTEIDSKLLKHHRTKDRRWWRAQAVRYLMRFKSEYTCKLLNIARHQAFGMKAAKMVLQTLPPEWPKVDISGSESEIERYVWSNHKPWVPQPLLSIHVRLGDKAAEMNLVSFKGYMNLAQRIRRHFPDVQNIWLSTEMQEVIDQTKxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxFQMTRRVQRDLWLHQHPRNCHE
B8AEH7_________________GIIKVKENYTSKQIWAGHIPRIWGRPWKYMQPTTEIDGRLFKNHRKMDRRWWIAQALRYLMRFQSEYMCRLLNVARHSAFGMQAAKMVLENV-PDPPKPSISRTESDIERLVWSEHKPYIPGPLISMHVRMGDKACEMEVVGFEKYMELAGRLRKRFPSLKNIWLSTEMQEVIDETKxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxYPLTRQVQRDVWIHQHPPNCSD

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
565	33	66			0.997452
566	33			66	0.997452
567			66	33	0.997452
569	66			33	0.997452
808	25		75		0.996473
814			75	25	0.996473
852	75	25			0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain