SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene1994

Length: 246 nt

UniGene Fasta

>biog3_v1.0_unigene1994
AATGTGAATTTTTTGAATTTGTGAAAAGAATGAAAGAAATGCAGACTCCAGATCAAGATACCAGGAACTCTAAAAAGTTGATACTGCCTCAAAAGGGTGGTTTACTAGGTCCTGATGGTAACTTTTTATGTGCGTCACAGCTTAATCCTTTAAACTTTCGCCAGGCCATTTCTTCTTTCTGAGTAGACATGTTTTATTCCATTGCTCACTCAAGAACTTGAGACTTGATAAATGTTTTGATGGAAG

Ace file of the UniGene biog3_v1.0_unigene1994

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene370	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	P-loop containing nucleoside triphosphate hydrolase-like protein [Arabidopsis thaliana] gb\|AAY25445.1\| At1g72040 [Arabidopsis thaliana] dbj\|BAF00702.1\| hypothetical protein [Arabidopsis thaliana] gb\|AEE35266.1\| P-loop containing nucleoside triphosphate hy	-	-	66%
FL-Next	tr=Putative dCK/dGK-like deoxyribonucleoside kinase; Oryza sativa subsp. japonica (Rice).	-	-	49%
Blast2go	deoxycytidine kinase	-	-	82%

Source	ECs	Term	Type	e value	Identity
Blast2go	Deoxycytidine kinase.	EC:2.7.1.74	-	0.0	82%

Source	KEGGs	Term	Type	Identity
Blast2go	Purine metabolism	00230		82%
Blast2go	Pyrimidine metabolism	00240		82%
Blast2go	Metabolic pathways	01100		82%
Blast2go	Transferases, Transferring phosphorous-containing groups, Phosphotransferases with an alcohol group as acceptor.	EC:2.7.1.-	-	82%

Source	KEGGs	Term	Identity
Blast2go	Pentose phosphate pathway	00030	82%
Blast2go	Lipopolysaccharide biosynthesis	00540	82%
Blast2go	Nicotinate and nicotinamide metabolism	00760	82%
Blast2go	Metabolic pathways	01100	82%

Source	GOs	Term	Type	Identity
Blast2go	nucleobase-containing compound metabolic process	GO:0006139	Biological Process	82%
Blast2go	phosphorylation	GO:0016310	Biological Process	82%
Blast2go	deoxycytidine kinase activity	GO:0004137	Molecular Function	82%
Blast2go	phosphotransferase activity, alcohol group as acceptor	GO:0016773	Molecular Function	82%
Blast2go	ATP binding	GO:0005524	Molecular Function	82%
Blast2go	nucleus	GO:0005634	Cellular Component	82%

Source	InterPros	Term	Type	e value	Identity
Sma3	Pyridoxal phosphate-dependent decarboxylase	IPR002129	-	0.0	-
Sma3	Deoxynucleoside kinase	IPR002624	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: Q5N728

Fln msg: your sequence is shorter than subject: 60 - 297

Fln protein: CEFFEFVKRMKEMQTPDQDTRNSKKLILPQKGGLLGPDGNFLCASQLNPLNFRQAISSF*

Protein Length: 61

Fln nts: AATGTGAATTTTTTGAATTTGTGAAAAGAATGAAAGAAATGCAGACTCCAGATCAAGATACCAGGAACTCTAAAAAGTTGATACTGCCTCAAAAGGGTGGTTTACTAGGTCCTGATGGTAACTTTTTATGTGCGTCACAGCTTAATCCTTTAAACTTTCGCCAGGCCATTTCTTCTTTCTGA___GTAGACATGTTTTATTCCATTGCTCACTCAAGAACTTGAGACTTGATAAATGTTTTGATGGAAG

Fln Alignment:

Contig1994___EFFEFVKRMKEMQTPDQ---DTRNSKKLILPQKGGLLGPDGNFLCASQLNPLNFRQAISSF
Q5N728_________________EFFEFVKKKKEDPSAESSGGDKSTNKQIMLPHRGGLWVPEGNPLPGSALNSLDFRRAMSSF

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
191	25		75		0.996473
192		25		75	0.996473
193	25			75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain