SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene1957

Length: 738 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene1957 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene4219	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative Fip1 motif containing protein [Oryza sativa Japonica Group] gb\|ABF98630.1\| Fip1 motif family protein, expressed [Oryza sativa Japonica Group] gb\|ABF98631.1\| Fip1 motif family protein, expressed [Oryza sativa Japonica Group]	-	-	4.99983e-42	39%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	39%
Blast2go	atp binding	-	-	0.0	59%

Source	ECs	Term	Type	e value	Identity
Blast2go	Adenosinetriphosphatase.	EC:3.6.1.3	-	0.0	59%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Purine metabolism	00230		0.0	59%

Source	GOs	Term	Type	Identity
Blast2go	ATP catabolic process	GO:0006200	Biological Process	59%
Blast2go	transcription, DNA-dependent	GO:0006351	Biological Process	59%
Blast2go	RNA binding	GO:0003723	Molecular Function	59%
Blast2go	identical protein binding	GO:0042802	Molecular Function	59%
Blast2go	sequence-specific DNA binding	GO:0043565	Molecular Function	59%
Blast2go	ATP binding	GO:0005524	Molecular Function	59%
Blast2go	ATPase activity	GO:0016887	Molecular Function	59%
Blast2go	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	59%

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein L6	IPR000702	-	-
Sma3	Ribosomal protein L6, conserved site	IPR002358	-	-
Sma3	DNA-binding WRKY	IPR003657	-	-
Sma3	ABC transporter, haem export, CcmA	IPR005895	-	-
Sma3	Pre-mRNA polyadenylation factor Fip1	IPR007854	-	-

Full-Lengther Next Prediction

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
11		66		33	0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain