SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene1847

Length: 363 nt

UniGene Fasta

>biog3_v1.0_unigene1847
AATGTCTATGTGCACTGATAAATGGCGGAACTTGTTGAAAGAGTACAAGAAGGTAAAGCATCAGGACCGGGGCGGCGGATCTGCGAAGATGTCGTGTTACAAGGATTTAGAGGAATTACTGAGGGAGAGAGCCAAGAATGCGGCATACAAGACGCCTCCGGCCGCAGCTGCTGCAAAGATGGACACTTACATTCATTTTTCGCCCAAAGGAAGTGGGAAGTCGTCACTCAATCTAGAACGCAGATTAGATCATGATGGACATCCTTTGGCAATAGCATCAGTTGATGCAACTGCTGCCAATGGGGTACCGCCATGGAATTGGAGGGATGCCACTGCAAATGGTGATCATCACACGTCTTATGG

Ace file of the UniGene biog3_v1.0_unigene1847

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10022	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	Transcription factor, putative n=1 Tax=Ricinus communis RepID=B9RMJ9_RICCO	-	-	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	72%
Blast2go	dna-binding protein	-	-	73%

Source	GOs	Term	Type	Identity
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	73%
Blast2go	identical protein binding	GO:0042802	Molecular Function	73%
Blast2go	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	73%
Blast2go	sequence-specific DNA binding	GO:0043565	Molecular Function	73%
Blast2go	nucleus	GO:0005634	Cellular Component	73%

Source	InterPros	Term	Type	e value	Identity
Sma3	SANT/Myb domain	IPR001005	-	0.0	-
Sma3	Myb-like domain	IPR017877	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NQR4

Fln msg: Distance to subject end: 137 aas, your sequence is shorter than subject: 120 - 348

Fln protein: MSMCTDKWRNLLKEYKKVKHQDRGGGSAKMSCYKDLEELLRERAKNAAYKTPPAAAAAKMDTYIHFSPKGSGKSSLNLERRLDHDGHPLAIASVDATAANGVPPWNWRDATANGDHHTSY

Protein Length: 121

Fln nts: AATGTCTATGTGCACTGATAAATGGCGGAACTTGTTGAAAGAGTACAAGAAGGTAAAGCATCAGGACCGGGGCGGCGGATCTGCGAAGATGTCGTGTTACAAGGATTTAGAGGAATTACTGAGGGAGAGAGCCAAGAATGCGGCATACAAGACGCCTCCGGCCGCAGCTGCTGCAAAGATGGACACTTACATTCATTTTTCGCCCAAAGGAAGTGGGAAGTCGTCACTCAATCTAGAACGCAGATTAGATCATGATGGACATCCTTTGGCAATAGCATCAGTTGATGCAACTGCTGCCAATGGGGTACCGCCATGGAATTGGAGGGATGCCACTGCAAATGGTGATCATCACACGTCTTATGG

Fln Alignment:

Contig1847___SMCTDKWRNLLKEYKKVKHQ-DRGGGSAKMSCYKDLEELLRERXXXXXXXXXXXXXXXXMDTYIHFSPKGSGKSSLNLERRLDHDGHPLAIASVDATAANGVPPWNWRDATAN-GDHHTSY
A9NQR4_________________TMCTDKWRNLLKEYKKAKHHHDSHDGSAKMSCYKDLEELLRERAKVAPYRSPNKVAA--LDSYPHFSPKGTGRSPFNLERRLDHDGLPLALPLSDATAANGTPPWNWRDATGNGGENHTSY

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
82	33			66	0.997452
83	33		66		0.997452
84		66		33	0.997452
86	66			33	0.997452
222	25	75			0.996473
223	25		75		0.996473
225		75	25		0.996473
226	75			25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain