SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene1837

Length: 590 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene1837 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1774	7/7

Source	Descriptions	Term	Type	Identity
AutoFact	Mo25 domain containing protein	-	-	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	61%
Blast2go	protein	-	-	80%

Source	GOs	Term	Type	Identity
Blast2go	ribosome biogenesis	GO:0042254	Biological Process	80%
Blast2go	binding	GO:0005488	Molecular Function	80%
Blast2go	ribonucleoprotein complex	GO:0030529	Cellular Component	80%

Source	InterPros	Term	Type	Identity
Sma3	HEAT	IPR000357	-	-
Sma3	Ribosomal protein L7A/L8	IPR001921	-	-
Sma3	Ribosomal protein L7Ae conserved site	IPR004037	-	-
Sma3	Ribosomal protein L7Ae/L30e/S12e/Gadd45	IPR004038	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	Mo25-like	IPR013878	-	-
Sma3	Ribosomal protein L7Ae/L8/Nhp2 family	IPR018492	-	-

Full-Lengther Next Prediction

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
249	83		16		0.994512
336	20	80			0.995493
339		80	20		0.995493
340		80		20	0.995493
417		20		80	0.995493
418	20	80			0.995493
420		80		20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain