SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene1811

Length: 782 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene1811 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9503	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	PREDICTED: similar to splicing factor, putative n=1 Tax=Vitis vinifera RepID=UPI0001983CB2	-	-	60%
FL-Next	tr=Putative uncharacterized protein; Oryza sativa subsp. indica (Rice).	-	-	98%
Blast2go	splicing factor 3b	-	-	67%

Source	GOs	Term	Type	e value	Identity
Blast2go	mRNA processing	GO:0006397	Biological Process	0.0	67%
Blast2go	chloroplast	GO:0009507	Cellular Component	0.0	67%

Source	InterPros	Term	Type	Identity
Sma3	HEAT	IPR000357	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	Splicing factor 3B subunit 1	IPR015016	-	-

Full-Lengther Next Prediction

SSRs (tot: 1)

Start position	End position	Sequence	Length
14	25	TCC TCC TCC TCC	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain