SustainPineDB

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Assembly info
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SSRs
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ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene1803

Length: 215 nt

UniGene Fasta

>biog3_v1.0_unigene1803
AATGTAGCTAGGTGGAAAAGCAAGCAGCTGGAGAAAGATTTCGATGCTCTGAAGCAAGAATACGACACTCTCAAGCGGAACTATGATATCCTCCTGCAACAAAACACACAATTCAAAGCTGAGCAGCAGGGTGCGGAACTAGAGAAAGAAAACGGGAGCGGCAAGTGTAGGGCTTCCGAGACCGTATCCCAGAAAAATCACAGGATTCAGTACAT

Ace file of the UniGene biog3_v1.0_unigene1803

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene14748	3/3

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Homeobox-leucine zipper-like protein n=2 Tax=Picea RepID=Q3HRT1_PICGL	-	-	9.0e-32	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	56%
Blast2go	homeobox-leucine zipper protein athb-13	-	-	0.0	74%

Source	GOs	Term	Type	Identity
Blast2go	response to sucrose stimulus	GO:0009744	Biological Process	74%
Blast2go	leaf morphogenesis	GO:0009965	Biological Process	74%
Blast2go	cotyledon morphogenesis	GO:0048826	Biological Process	74%
Blast2go	sequence-specific DNA binding	GO:0043565	Molecular Function	74%

Source	InterPros	Term	Type	Identity
Sma3	Helix-turn-helix motif	IPR000047	-	-
Sma3	Homeodomain	IPR001356	-	-
Sma3	Leucine zipper, homeobox-associated	IPR003106	-	-
Sma3		IPR012287	-	-
Sma3	Homeobox, conserved site	IPR017970	-	-
Sma3	Chaperonin Cpn60, conserved site	IPR018370	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NQH8

Fln msg: Distance to subject end: 147 aas, your sequence is shorter than subject: 71 - 300

Fln protein: NVARWKSKQLEKDFDALKQEYDTLKRNYDILLQQNTQFKAEQQGAELEKENGSGKCRASETVSQKNHRIQY

Protein Length: 72

Fln nts: AATGTAGCTAGGTGGAAAAGCAAGCAGCTGGAGAAAGATTTCGATGCTCTGAAGCAAGAATACGACACTCTCAAGCGGAACTATGATATCCTCCTGCAACAAAACACACAATTCAAAGCTGAGCAGCAGGGTGCGGAACTAGAGAAAGAAAACGGGAGCGGCAAGTGTAGGGCTTCCGAGACCGTATCCCAGAAAAATCACAGGATTCAGTACAT

Fln Alignment:

Contig1803___ARWKSKQLEKDFDALKQEYDTLKRNYDILLQQNTQFKAEQQ--GAELEKENGSGKCRASETVSQK
A9NQH8_________________ARWKTKQMEKNFAVLKHEYETLRRNYDILFQKNRQFKDEVQWLSRELKDNDRSSKVSISEIESQK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain