SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene1761

Length: 286 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene1761
GAAAAGGAAGAACAAATATCAATTCTTTGGCAGGTACCTCAGTATGTATTACTGACAGCAGCAGAAGTAATATTCAGTGTCACTGGATTGGAATTTTCCTATTCACAGGCCCCTGTTTCTATGAAGTCAGTTGTTCAAGCAATCTGGCATCTGACATCTGCTGAAGGTGATTTGATCACCATTTTAGTTGTGGGTATCATTGGGAACCAGCTATCAACAGCAAATAGGTCGTTTTTATTTGCAGCAGGAGGCATTGTTGGTCTGGTGTTCATGATATGGCTACATT

Ace file of the UniGene biog3_v1.0_unigene1761 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene5744	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	solute carrier family 15 (H+/peptide transporter), member 2, isoform CRA_a [Mus musculus]	-	-	1.0e-16	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	45%
Blast2go	cre-opt-1 protein	-	-	2.45458e-30	71%

Source	GOs	Term	Type	e value	Identity
Blast2go	dipeptide transport	GO:0042938	Biological Process	2.45458e-30	71%
Blast2go	antibiotic transport	GO:0042891	Biological Process	2.45458e-30	71%
Blast2go	protein transport	GO:0015031	Biological Process	2.45458e-30	71%
Blast2go	dipeptide transporter activity	GO:0042936	Molecular Function	2.45458e-30	71%
Blast2go	proton-dependent oligopeptide secondary active transmembrane transporter activity	GO:0005427	Molecular Function	2.45458e-30	71%
Blast2go	antibiotic transporter activity	GO:0042895	Molecular Function	2.45458e-30	71%
Blast2go	high affinity oligopeptide transporter activity	GO:0015334	Molecular Function	2.45458e-30	71%
Blast2go	symporter activity	GO:0015293	Molecular Function	2.45458e-30	71%
Blast2go	integral to plasma membrane	GO:0005887	Cellular Component	2.45458e-30	71%
Blast2go	membrane fraction	GO:0005624	Cellular Component	2.45458e-30	71%

Source	InterPros	Term	Type	e value	Identity
Sma3	Oligopeptide transporter	IPR000109	-	0.0	-
Sma3	PTR2 family proton/oligopeptide symporter, conserved site	IPR018456	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NVR2

Fln msg: Distance to subject end: 25 aas, your sequence is shorter than subject: 95 - 594

Fln protein: EKEEQISILWQVPQYVLLTAAEVIFSVTGLEFSYSQAPVSMKSVVQAIWHLTSAEGDLITILVVGIIGNQLSTANRSFLFAAGGIVGLVFMIWLH

Protein Length: 96

Fln nts: GAAAAGGAAGAACAAATATCAATTCTTTGGCAGGTACCTCAGTATGTATTACTGACAGCAGCAGAAGTAATATTCAGTGTCACTGGATTGGAATTTTCCTATTCACAGGCCCCTGTTTCTATGAAGTCAGTTGTTCAAGCAATCTGGCATCTGACATCTGCTGAAGGTGATTTGATCACCATTTTAGTTGTGGGTATCATTGGGAACCAGCTATCAACAGCAAATAGGTCGTTTTTATTTGCAGCAGGAGGCATTGTTGGTCTGGTGTTCATGATATGGCTACATT

Fln Alignment:

Contig1761___ISILWQVPQYVLLTAAEVIFSVTGLEFSYSQAPVSMKSVVQAIWHLTSAEGDLITILVVGII
A9NVR2_________________MSIFWQIPQYFLVGASEVFTFVGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSLIVTIV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain