SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene1746

Length: 587 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene1746 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2881	3/7
SustainPine v2.0	sp_v2.0_unigene25726	1/7
SustainPine v2.0	sp_v2.0_unigene28755	3/7

Source	Descriptions	Term	Type	Identity
AutoFact	MA3 domain-containing protein [Arabidopsis thaliana] ref\|NP_001031708.1\| MA3 domain-containing protein [Arabidopsis thaliana] ref\|NP_001190828.1\| MA3 domain-containing protein [Arabidopsis thaliana] gb\|AAL32978.1\| AT4g24800/F6I7_10 [Arabidopsis thaliana]	-	-	51%
FL-Next	sp=Eukaryotic initiation factor iso-4F subunit p82-34; Triticum aestivum (Wheat).	-	-	31%
Blast2go	ma3 domain-containing protein	-	-	79%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	0.0	79%

Source	InterPros	Term	Type	Identity
Sma3	Oxidoreductase, molybdopterin-binding domain	IPR000572	-	-
Sma3	Initiation factor eIF-4 gamma, MA3	IPR003891	-	-
Sma3	Transketolase, N-terminal	IPR005474	-	-
Sma3	Methyltransferase type 11	IPR013216	-	-

Full-Lengther Next Prediction

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
129	33		66		0.997452
130	66			33	0.997452
376		33		66	0.997452
522		25	75		0.996473
523	25	75			0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain