SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene1657

Length: 841 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene1657

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1437	10/10

Source	Descriptions	Term	Type	Identity
AutoFact	glycosyl transferase family 1 protein [Noccaea caerulescens]	-	-	61%
FL-Next	sp=GDP-Man:Man(3)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase; Arabidopsis thaliana (Mouse-ear cress).	-	-	64%
Blast2go	glycosyl transferase family 1 protein	-	-	76%

Source	GOs	Term	Type	Identity
Blast2go	response to osmotic stress	GO:0006970	Biological Process	76%
Blast2go	response to abscisic acid stimulus	GO:0009737	Biological Process	76%
Blast2go	plant-type cell wall biogenesis	GO:0009832	Biological Process	76%
Blast2go	protein N-linked glycosylation	GO:0006487	Biological Process	76%
Blast2go	transferase activity, transferring glycosyl groups	GO:0016757	Molecular Function	76%
Blast2go	endoplasmic reticulum membrane	GO:0005789	Cellular Component	76%

Source	InterPros	Term	Type	e value	Identity
Sma3	Glycosyl transferase, family 1	IPR001296	-	0.0	-
Sma3	EXTL2, alpha-1,4-N-acetylhexosaminyltransferase	IPR015338	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9XEE9

Fln msg: Distance to subject end: 42 aas, your sequence is shorter than subject: 280 - 463

Fln protein: NVFTYPVARLFGCKVACYTHYPTISSDMLSRVLSRNSMYNNVNAIASSFWLSRGKAVYYKFMTWTYGWVGFYSNLAMVNSSWTQSHIEKLWNIPQRIRRVYPPCNTLSLQALPLERPEKLQNFISVAQFRPEKAHGIQLEAFAIAMKRVNMEAPEHPDVQFVRRLQIVGSCRNKEDEERLLHLRKKCSELGIDKQVEFRENVNYNDLVDLLGGVIAGLHSMTDEHFGISIVEYMAAGAVPIAHNSAGPKMDIVLDEDGQKTGFLAENVDEFGDAIYVLMT

Protein Length: 281

Fln nts: AATGTCTTCACATACCCTGTTGCACGTTTGTTTGGCTGCAAGGTTGCTTGTTACACACATTATCCAACAATCAGTTCAGATATGCTTTCTCGTGTTCTGAGCCGCAATTCAATGTATAATAATGTTAATGCCATTGCAAGCAGCTTTTGGTTATCGAGAGGTAAGGCAGTTTACTACAAGTTTATGACTTGGACATATGGATGGGTAGGTTTCTATTCAAACTTGGCAATGGTCAACTCTTCATGGACACAATCTCATATTGAAAAGCTATGGAACATACCTCAACGAATTAGGAGAGTGTACCCTCCCTGCAATACGCTCTCTCTCCAGGCACTTCCTTTGGAGAGACCAGAGAAATTACAGAATTTCATCTCAGTTGCTCAATTTCGACCAGAGAAGGCCCATGGTATTCAACTAGAGGCTTTTGCCATTGCCATGAAAAGAGTAAACATGGAAGCACCAGAACATCCGGATGTGCAATTTGTAAGGAGGCTTCAAATTGTTGGAAGCTGTCGAAATAAGGAAGATGAAGAGAGACTACTTCATTTAAGGAAGAAATGCTCTGAACTGGGAATTGATAAACAAGTTGAATTTCGTGAGAATGTGAATTACAATGACCTGGTGGATCTCCTTGGAGGGGTTATTGCCGGCCTTCATTCGATGACGGATGAACATTTTGGCATAAGTATTGTGGAATACATGGCAGCTGGTGCAGTGCCAATTGCTCACAATTCTGCGGGACCAAAGATGGACATTGTTTTGGATGAAGATGGACAAAAGACTGGGTTTCTAGCCGAAAATGTAGATGAGTTTGGTGATGCTATATATGTTCTTATGACAA

Fln Alignment:

Contig1657___FTYPVARLFGCKVACYTHYPTISSDMLSRVLSRNSMYNNVNAIASSFWLSRGKAVYYKFMTWTYGWVGFYSNLAMVNSSWTQSHIEKLWNIPQRIRRVYPPCNTLSLQALPLERPEKLQNFISVAQFRPEKAHGIQLEAFAIAMKRVNMEAPEHPDVQFVRRLQIVGSCRNKEDEERLLHLRKKCSELGIDKQVEFRENVNYNDLVDLLGGVIAGLHSMTDEHFGISIVEYMAAGAVPIAHNSAGPKMDIVLDEDGQKTGFLAENVDEFGDAI
Q9XEE9_________________FTYPLARIFGCKVVCYTHYPTISLDMISRVRQRNSMYNNDASIAKSNWLSTCKLVYYRAFSWMYGMVGSCTHLAMVNSSWTKSHIEVLWRIPERITRVYPPCDTSGLQAFPLERSSDPPKIISVAQFRPEKAHMLQLEAFSLALEKLDADVPR-------PKLQFVGSCRNNSDEERLQKLKDRAVELKVDGDVQFYKNAMYRELVELLGNAVAGLHGMIDEHFGISVVEYMAAGAIPIAHNSAGPKMDIVLEEDGQKTGFLAETVEEYAEAI

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
149			80	20	0.995493
246	16		83		0.994512
248		83		16	0.994512
249	83		16		0.994512
250		83		16	0.994512
526			40	40	1.0
643		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain