SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene1649

Length: 883 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene1649

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6984	7/7

Source	Descriptions	Term	Type	Identity
AutoFact	WRKY transcription factor PmWRKY108 (Fragment) n=2 Tax=Pinus monticola RepID=E6Y3E0_PINMO	-	-	84%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	50%
Blast2go	wrky transcription factor	-	-	64%

Source	GOs	Term	Type	Identity
Blast2go	transcription, DNA-dependent	GO:0006351	Biological Process	64%
Blast2go	sequence-specific DNA binding	GO:0043565	Molecular Function	64%
Blast2go	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	64%

Source	InterPros	Term	Type	Identity
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	IPR000194	-	-
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	DNA-binding WRKY	IPR003657	-	-
Sma3	Paired amphipathic helix	IPR003822	-	-
Sma3	Epidermal growth factor-like	IPR006210	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	Leucine-rich repeat 3	IPR011713	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Glycoside hydrolase, family 1, active site	IPR018120	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5ABY6

Fln msg: Distance to subject end: 67 aas, your sequence is shorter than subject: 294 - 411

Fln protein: AAARHEEGESTEGCGALVKIEDPSSTPPRRQNSNHLESLGTPEQSISASEEDDARTQVDKFSGDEDLDEEESDSKRRKKEVNTMDIIGATRTIREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTNAGCSVRKHVERASHDPKAVITTYEGKHNHDVPAPRNSSHTNAGLGSGQPSVPILQNSVAPSTNGMALTAPGTQETFSHFDRHPDLHNGYGNNNYMFGRTANESYNSQNGRAGVGIAERNMALGMSLGAFGLESKHSEIQQAEAPTSFPMQIKPASHE

Protein Length: 295

Fln nts: TGCGGCCGCTCGTCATGAAGAGGGAGAAAGTACTGAAGGCTGTGGTGCTCTTGTCAAAATTGAAGATCCATCGTCTACTCCACCGCGAAGGCAAAACTCTAATCACCTGGAGTCACTAGGTACACCAGAGCAATCAATTTCTGCAAGTGAAGAAGATGATGCAAGAACCCAAGTGGACAAGTTCTCTGGTGATGAAGATCTTGATGAAGAAGAATCTGATTCAAAGCGCAGGAAGAAAGAAGTTAATACGATGGATATCATAGGGGCAACTAGAACTATTCGGGAGCCTCGTGTTGTTGTACAAACAACAAGTGATATCGATATCCTTGACGATGGGTATCGCTGGCGCAAGTATGGACAGAAAGTAGTAAAAGGAAATCCCAACCCAAGGAGCTACTATAAATGCACAAATGCAGGATGTTCAGTGAGGAAGCATGTTGAAAGAGCCTCGCATGACCCGAAGGCAGTAATTACAACGTATGAGGGAAAACACAACCACGATGTCCCAGCTCCAAGAAACAGTAGCCATACCAATGCTGGATTAGGGAGTGGACAACCATCAGTACCTATTTTGCAGAATAGTGTTGCGCCCTCCACAAATGGAATGGCATTGACTGCTCCTGGAACTCAAGAGACATTCTCACATTTTGATAGGCATCCTGATCTTCATAATGGCTATGGGAACAACAATTACATGTTTGGAAGAACTGCAAATGAGAGTTATAATTCTCAAAATGGGCGTGCAGGTGTAGGTATTGCCGAGAGAAATATGGCGTTGGGGATGAGCCTTGGGGCATTTGGTCTAGAGAGTAAGCACTCAGAAATACAGCAAGCAGAAGCTCCCACTTCTTTTCCAATGCAGATTAAGCCTGCAAGCCATGAA

Fln Alignment:

Contig1649___AARHEEGESTEGCGALVKIEDPSSTPPRRQNSNHLESLGTPEQSISASEEDDAR---TQVDKFSGXXXXXXXXXXXXXXXXXVNTMDIIGATRTIREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTNAGCSVRKHVERASHDPKAVITTYEGKHNHDVPAPRNSSHTNAGLGSGQPSVPILQNSVAPST----------NGMALTAPGTQETFSHFDRHPDLHNGYGNNNYMFGRTANESYNSQNGRAGVGIAERNMALGMSLGAFGLESKHSEIQQ-AEAPTSFPMQI
D5ABY6_________________AWKNELLERSSSASGVTDLSDPSSTA-QVQSSSRLDSLGTPELSSTLASDDDMEDGGTNDSKSLGDDGDENESDSKRRKKEN-NTVDIVAASRAIREPRVVVQTTSEIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHDVPAARNSSHDNAAKGNGAAPLAMQTNGPAPMNTIPRSVPQVQDIVSRPVPQVQGIVSRFDRHLDPRNEYGKRAY-FEKVVDGNLRLQDKNA--GSLDLKMGAGMGFGMFGLGNSHTDKRQIAEGHPPFPMQI

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
356	16			83	0.994512
357			83	16	0.994512
359	83			16	0.994512
395	16	83			0.994512
396		16		83	0.994512
398		83		16	0.994512
418			80	20	0.995493
419			80	20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain