SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene1642

Length: 1249 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene1642 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3435	20/21

Source	Descriptions	Term	Type	Identity
AutoFact	1,8-cineole synthase n=3 Tax=Picea RepID=C0PT35_PICSI	-	-	74%
FL-Next	tr=(-)-linalool synthase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	73%
Blast2go	linalool synthase	-	-	80%

Source	ECs	Term	Type	e value	Identity
Blast2go	Pinene synthase.	EC:4.2.3.14	-	0.0	80%

Source	KEGGs	Term	Identity
Blast2go	Monoterpenoid biosynthesis	00902	80%
Blast2go	Biosynthesis of terpenoids and steroids	01062	80%
Blast2go	Metabolic pathways	01100	80%
Blast2go	Biosynthesis of secondary metabolites	01110	80%

Source	GOs	Term	Type	Identity
Blast2go	metabolic process	GO:0008152	Biological Process	80%
Blast2go	pinene synthase activity	GO:0050550	Molecular Function	80%
Blast2go	magnesium ion binding	GO:0000287	Molecular Function	80%
Blast2go	chloroplast	GO:0009507	Cellular Component	80%

Source	InterPros	Term	Type	Identity
Sma3	Prenyltransferase/squalene oxidase	IPR001330	-	-
Sma3	Terpene synthase-like	IPR001906	-	-
Sma3	Terpene synthase, metal-binding domain	IPR005630	-	-
Sma3	Terpenoid synthase	IPR008949	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PPR1

Fln msg: Overlapping hits, possible frame ERROR between 453 and 450, Distance to subject end: 179 aas, your sequence is shorter than subject: 416 - 626

Fln protein: NVIPTLPVCTRRKTFTVSITMCLTDPVSDDGVKRRIGNHHSNVWDHDFIHSLSTPYEAPSYRERADKLISEVEEMFSEIEDGVSITPLNDLLSRLSMVDSIERLGIDRHFKTEIKSALDYVHSYWSEKGIGCGRESVDSDLNSTALGLRxxxRLHGYPVSSGVLEHFKDEKGQLASSSIQTEGEMRSIFNLFRASLVAFPNEKILEDAEIFCTIYLKESLPRIPVCLSQQIEYVMEYGWHTNLPRLEARHYMDAFGSDEMPWMPYMNTEKLLELAKLEFNIFHSIQQRELKHISRWWEEFGFLSIEFCSASPRGILHFRLLHCN*S*PFCIPTRLCQNMSCCHCSG*YL*HVWNHGRARTLDSGD*EMGSVSDRAASRIHETSVHGVL*NRK*TGTRGREVSRPRYNQLCSTGCMT

Protein Length: 417

Fln nts: AATGTAATCCCAACTCTACCAGTGTGCACACGACGGAAAACCTTCACAGTTTCCATCACCATGTGTTTGACAGACCCTGTATCCGATGATGGTGTAAAGAGACGCATAGGGAATCATCATTCCAACGTCTGGGACCACGATTTCATACACTCTCTCTCCACGCCTTATGAGGCGCCTTCATACCGTGAACGTGCAGATAAACTTATTAGCGAAGTGGAAGAGATGTTCTCTGAAATTGAAGATGGGGTATCAATCACTCCCCTCAATGATCTGCTTTCACGCCTTTCCATGGTCGATAGCATCGAACGTTTGGGAATCGATAGGCATTTCAAAACTGAGATAAAATCAGCGCTGGATTATGTACACAGTTATTGGAGCGAAAAAGGCATCGGCTGTGGGAGAGAGAGTGTCGACAGCGACCTCAACTCAACAGCGTTGGGTCTTCGAxxxxxxxxxCGACTACACGGATACCCTGTCTCTTCAGGTGTGCTAGAACACTTTAAAGACGAGAAGGGGCAGCTTGCGAGTTCTTCCATTCAAACAGAAGGAGAGATGAGAAGTATATTCAATCTATTTCGTGCCTCCCTCGTTGCGTTTCCAAATGAGAAAATTCTGGAAGACGCTGAGATCTTCTGTACGATATATTTAAAAGAGTCTCTTCCAAGGATTCCGGTATGTCTTTCCCAACAGATAGAATACGTTATGGAGTATGGTTGGCATACAAATCTTCCACGACTGGAAGCAAGGCACTACATGGACGCATTTGGATCTGATGAGATGCCATGGATGCCATATATGAATACCGAAAAGCTTTTAGAACTTGCAAAATTAGAGTTCAATATATTTCACTCGATACAACAGAGAGAGCTGAAACATATCTCCAGATGGTGGGAGGAATTCGGGTTTCTCTCAATTGAATTTTGCTCGGCATCGCCACGTGGAATATTACACTTTCGCCTCTTGCATTGCAATTGATCCTAACCATTCTGCATTCCGACTCGGCTATGCCAAAATATGTCATGTTGTCACTGTTCTGGATGATATCTATGACACGTTTGGAACCATGGAAGAGCTCGAACTCTTGACAGCGGCGATTAAGAGATGGGATCCGTCAGCGACAGAGCGGCTTCCAGAATACATGAAACGAGTGTACATGGTGTTTTATGAAACCGTAAATGAACTGGCACGAGAGGCAGAGAAGTCTCAAGGCCGAGATACAATCAATTATGTTCGACAGGCTGTATGACATT

Fln Alignment:

Contig1642___IPTLPVCTRRKTFTVSITMCLTDPVSDDGVKRRIGNHHSNVWDHDFIHSLSTPYEAPSYRERADKLISEVEEMFSEI--EDGVSITPLNDLLSRLSMVDSIERLGIDRHFKTEIKSALDYVHSYWSEKGIGCGRESVDSDLNSTALGLRxxRLHGYPVSSGVLEHFKDEKGQLASSSIQTEGEMRSIFNLFRASLVAFPNEKILEDAEIFCTIYLKESLPRIPVC-LSQQIEYVMEYGWHTNLPRLEARHYMDAFGSDEMPWMPYMNTEKLLELAKLEFNIFHSIQQRELKHISRWWEEFGFLSIEFCSASPRGILHFRLLHC
C0PPR1_________________IPTLGRCRRGKTVTPSISMCWTATVLDDGVQRRIANHHSNLWDDSFIQSLSTPYGETSYLERADKLIGEVKEIINSISVEDGELITPLNDLIQRLSIVDNIERLGIDRHFKNEIKSALDYVYSYWNEKGIGCGRESVITDLNSTALGLRxxRLHGYPVSSDVFEQFKEQNGQFACSAIQTEGEIKKVLNLFRASLIAFPGEKVMEEAEIFSTIYLKEALLKIPVCSLSREIAYVLEYGWHMNLPRLEARNYIDVFGQDPIYLTLNMRTQKLIELAKLEFNIFHSLQQEELKHVSRWWKDSGFSQMAY--ARHRHVEFYTLASC

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
451	83			16	0.994512
482			90	10	0.90298
565	12		87		0.992554
581	16	83			0.994512
582			83	16	0.994512
583			83	16	0.994512
700	16	83			0.994512
703		83	16		0.994512
802	66		16		0.988813
803	16		83		0.994512
834	14		85		0.993533
835	28			71	1.0
836		85		14	0.993533
837	14		85		0.993533
838		71		28	1.0
876	20		80		0.995493
997	66			33	0.997452
1027		25	75		0.996473
1029	75			25	0.996473
1030		75		25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain