SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene1623

Length: 501 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene1623
TTCATGGGAGGTTGGAGTGTACTTCTCCAGCATTCAGAAACAATATTGGCAGAACTCACCATGTAAAATCTTGGAGACAATCTTCAGGGAAGTTTCAGTTTTTCCTTTCCTCTGAGTCAGGCAATAGCAACTGGTCAAAGCCAAAAAAATCAGGAAAGATTGGCGTTTCTTTTATAAAATATAGGCAACACTCTGAAAATCCTGACACAAATGATCCCAGGATTAAGGCACGTGCAGATTTTGAACCTGACATTGGAGCAGATGCACCAGATGCAGTGAGCTCATTCAAAGTATTGCCAGCGTCTGTTACAGTGCAGGGGGTGGTAGACAGAGGATATTTATGGTTGAATGAGTTTCCAAGGCGCTGGTTGGATTGTGCTGCTTTGTTTCTCTGCCTTTCTTCTTTGCAACATGGATCGTGTAAACATGAGTATTGCCATCCTTCCCATGTCTAAAGAGTTTAATTGGAGCTCAACAACAGTTGGCTTGGTGCAGTCTTCA

Ace file of the UniGene biog3_v1.0_unigene1623 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3995	4/4

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[GEPR] COG0477 Permeases of the major facilitator superfamily	-	-	1.4013e-45	32%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	89%
Blast2go	sodium-dependent phosphate transport protein	-	-	0.0	90%

Source	GOs	Term	Type	Identity
Blast2go	transmembrane transport	GO:0055085	Biological Process	90%
Blast2go	inorganic phosphate transmembrane transporter activity	GO:0005315	Molecular Function	90%
Blast2go	organic anion transmembrane transporter activity	GO:0008514	Molecular Function	90%
Blast2go	chloroplast inner membrane	GO:0009706	Cellular Component	90%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Major facilitator superfamily	IPR011701	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKH1

Fln msg: Separated hits, possible frame ERROR between 371 and 373, Distance to subject end: 435 aas, your sequence is shorter than subject: 167 - 671

Fln protein: HGRLECTSPAFRNNIGRTHHVKSWRQSSGKFQFFLSSESGNSNWSKPKKSGKIGVSFIKYRQHSENPDTNDPRIKARADFEPDIGADAPDAVSSFKVLPASVTVQGVVDRGYLWLNEFPRRWxxIVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWSSTTVGLVQSS

Protein Length: 168

Fln nts: TTCATGGGAGGTTGGAGTGTACTTCTCCAGCATTCAGAAACAATATTGGCAGAACTCACCATGTAAAATCTTGGAGACAATCTTCAGGGAAGTTTCAGTTTTTCCTTTCCTCTGAGTCAGGCAATAGCAACTGGTCAAAGCCAAAAAAATCAGGAAAGATTGGCGTTTCTTTTATAAAATATAGGCAACACTCTGAAAATCCTGACACAAATGATCCCAGGATTAAGGCACGTGCAGATTTTGAACCTGACATTGGAGCAGATGCACCAGATGCAGTGAGCTCATTCAAAGTATTGCCAGCGTCTGTTACAGTGCAGGGGGTGGTAGACAGAGGATATTTATGGTTGAATGAGTTTCCAAGGCGCTGGTTxxxGATTGTGCTGCTTTGTTTCTCTGCCTTTCTTCTTTGCAACATGGATCGTGTAAACATGAGTATTGCCATCCTTCCCATGTCTAAAGAGTTTAATTGGAGCTCAACAACAGTTGGCTTGGTGCAGTCTTCA

Fln Alignment:

Contig1623___HGRLECTS-PAFRNNIGRT-HHVKSWRQSSGKFQFFLSSESGNSNWSKPKKSGKIGVSFIKYRQHSENPDTNDPRIKARADFEPDIGADAPDAVSSFKVLPASVTVQGVVDRGYLWLNEFPRRWLxIVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWSSTTVGLVQSS
B8LKH1_________________HGRLEYTSAPAFRNGIGRTSYHVKSRRQSAGKFQFFLSSESGNSNWSKPRNSGKIGVSFIKYRQHSENPDTNDPRIKARADFEPDIGADAPDAVSSFKVLPGSVTVQRVVDRGYLWLKEFPKRWLxIVLLCFFAFLLCNMDRVNMSIAILPMSREFNWSPATVGLVQSS

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
226	40	60			1.0
229		60		40	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain