SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene1596

Length: 805 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene1596 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene11884	6/6

Source	Descriptions	Term	Type	e value	Identity
AutoFact	GATA transcription factor 21 [Arabidopsis thaliana] sp\|Q5HZ36.2\|GAT21_ARATH RecName: Full=GATA transcription factor 21 dbj\|BAA97205.1\| unnamed protein product [Arabidopsis thaliana] gb\|ABG25059.1\| At5g56860 [Arabidopsis thaliana] gb\|AED96815.1\| GATA trans	-	-	4.0e-11	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	72%
Blast2go	gata transcription factor	-	-	5.90279e-16	62%

Source	GOs	Term	Type	e value	Identity
Blast2go	transcription, DNA-dependent	GO:0006351	Biological Process	5.90279e-16	62%
Blast2go	binding	GO:0005488	Molecular Function	5.90279e-16	62%

Source	InterPros	Term	Type	e value	Identity
Sma3	Zinc finger, GATA-type	IPR000679	-	0.0	-
Sma3	Zinc finger, NHR/GATA-type	IPR013088	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
572	50		50		1.0
573			50	50	1.0
574		50		50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain