SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene1570

Length: 1194 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene1570 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene208	18/18

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PAP_fibrillin domain containing protein	-	-	6.0e-16	24%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	86%
Blast2go	plastid-lipid-associated protein 8	-	-	0.0	71%

Source	GOs	Term	Type	e value	Identity
Blast2go	structural molecule activity	GO:0005198	Molecular Function	0.0	71%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	0.0	71%

Source	InterPros	Term	Type	e value	Identity
Sma3	Plastid lipid-associated protein/fibrillin conserved domain	IPR006843	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NPK5

Fln msg:

Fln protein: MALVNSSSYLSLFSATSTFIRPKVRANVNNWLGDAFSTPKFNVNGIEGCNAQHPFEGLAITSVVRPRAVIRSSVVRASPAPTSLQQTENSAENLLGTLLSMVEGTDRGAKLSNEEHERVARIVSQLECLCMPEPLKSPFILGEWDVEYCSNPTSPGGYYRSAIGRLLLRTKEMTQSIQAPDFVGNKVVFSVLNAIDGEVSLEGKFTPLDNKWIEITFDPPTLKFGSFNFQYGGQSSVKIAIIYLDERIRLGRGSRGSIFIFKRRG*

Protein Length: 267

Fln nts: AAGTGGCATGTCCTTGGTTGGATGTTCTGACCATATCCAAGCTTTATCCAATTCTTGTTTCTATGTAGGACACTCATCGAACTCTAGCTTATTTTGCACAAAACCAGGATCATCTTTCTTAAGATATTGGTCCACGACCACGTACCAAGGTGTTGGCCACGCATTACTCAGCCG_-_ATGGCCCTCGTCAATTCGTCTTCATATCTTTCTCTGTTCTCAGCAACATCAACATTCATTAGACCAAAAGTCCGTGCCAACGTTAACAATTGGCTCGGCGATGCCTTCAGCACCCCTAAATTCAATGTAAATGGAATTGAGGGGTGCAATGCACAACACCCATTTGAGGGCTTGGCGATCACCAGCGTTGTTCGACCCAGAGCAGTTATTAGAAGCTCAGTAGTGAGAGCATCTCCTGCTCCTACTTCTCTTCAACAGACTGAAAACAGTGCAGAAAATCTTTTGGGCACTCTTCTTTCCATGGTAGAGGGAACAGACAGAGGTGCCAAGTTAAGCAATGAAGAGCATGAAAGGGTTGCTAGGATTGTCTCTCAGTTGGAGTGTTTATGTATGCCAGAGCCCCTCAAGTCTCCATTTATACTTGGAGAGTGGGATGTTGAGTATTGCTCAAACCCAACATCACCTGGAGGTTACTACCGAAGTGCAATTGGGAGACTGCTATTGAGAACAAAGGAAATGACACAGAGTATACAGGCGCCAGATTTTGTGGGTAATAAGGTGGTCTTCTCTGTTCTCAATGCAATTGATGGAGAAGTTTCCTTGGAAGGGAAATTCACGCCTTTGGACAACAAATGGATTGAAATTACATTTGACCCACCTACTTTGAAGTTTGGCTCATTTAATTTTCAGTATGGAGGTCAGAGTAGTGTGAAAATTGCAATAATATATTTGGATGAGAGAATTAGGCTTGGCAGAGGTTCAAGGGGTTCGATTTTTATCTTTAAAAGGCGTGGCTAG___TGTTGATCCTATGGATATAAGATTTAGAAGCATTGTTCTAATAAGTTTCCTAGTATTTGTTAACGAGGGTGATGGATGAGGCAAGGTTAGTCATGGAATATCATTTGGCCAAGTAGTCTTGAACCAATGCAATTGCCAAGAAATGATCTCTTGTAATTTTATAATTCTGATTGGCGACTAGAATATATTGAAGTTAAAATAACAGTTTTAAATACAAACATT

Fln Alignment:

Contig1570___MALVNXXXXXXXXXXXXXFIRPKVRANVNNWLGDAFSTPKFNVNGIEGCNAQHPFEGLAITSVVRPRAVIRSSVVRASPAPTSLQQTENSAENLLGTLLSMVEGTDRGAKLSNEEHERVARIVSQLECLCMPEPLKSPFILGEWDVEYCSNPTSPGGYYRSAIGRLLLRTKEMTQSIQAPDFVGNKVVFSVLNAIDGEVSLEGKFTPLDNKWIEITFDPPTLKFGSFNFQYGGQSSVKIAIIYLDEXXXXXXXXXXXIFIFKRRG
A9NPK5_________________MALANSSSPLSLFSATPAIIRPKVRANINGRLIDAFSRYKPNGNGIEGCNAKHPIEGFAITSIVRLRAVIRSSVVRASSAATSLQQTENSAENLLGTLLSMVEGTDRGAKLSNEEHERVARIVSQLEHLCIPEPLKSPFILGEWNVEYCSNPRSPGGYYRSAIGRLLLRTKEMTQSIQAPDFVGNRVAFSAFNAIDGEVSLKGKFTPLDNKWIEITFDSPSLKFGPFDFQYGGESSVKIAIIYLDERIRLGRGSRGSIFIFKRCG

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
138	33	66			0.997452
139	33			66	0.997452
143		66		33	0.997452
644		88		11	0.923564
769	20		80		0.995493
795	20		80		0.995493
797	20			80	0.995493
798		80		20	0.995493
802	20	80			0.995493
805		80	20		0.995493
869	25			75	0.996473
870		25		75	0.996473
871	25		75		0.996473
873			75	25	0.996473
1022	25	75			0.996473
1026		75		25	0.996473

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain