SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene1566

Length: 497 nt

UniGene Fasta

>biog3_v1.0_unigene1566
AATGTATATGCAAAGAGTTTTCAGGAACCTTCATTATGTAGAAAGGTACGAGGAGCATACAATCCCTCATGCAATACAGACCAAATTTAAGAAAACCAAGATATACTTGTGGCCTGGTGCTATTGGAACAGGGATGAGGGCAAACAGTACAATTGAAAGTGTCCTCTATTTGGCTGGGTACAAGAATGTGAAATCTAAGGTGATTGGTTCACGACATCCACATAATACAGTAAAAGCTCTTTTCAAAGCTCTAAACATGATTGAGACTCCTAAGGATATCCAAGAGAAGTTTGGGCGTTCAGTGGTTGAATCATATTTGCTGAAATAGTGCACCCCAATTTAGCTTGTGTGCACAGGCCGTATTTATTATTTGATCCCTTTGTGCCAGTTTTTTGTTTGTTCTTAGGCAGAGCCATTACTGGCAATGTATACTGGGGGCAATGAATAATTCTACATTTTAGTCCATTGCAGAGATCTTCTACTTCGGCAGTGCAGTC

Ace file of the UniGene biog3_v1.0_unigene1566

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7709	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	putative ribosomal protein S5 [Oryza sativa Japonica Group] dbj\|BAD08197.1\| putative ribosomal protein S5 [Oryza sativa Japonica Group] dbj\|BAH00782.1\| unnamed protein product [Oryza sativa Japonica Group]	-	-	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	31%
Blast2go	ribosomal protein s5 family protein	-	-	82%

Source	GOs	Term	Type	Identity
Blast2go	translation	GO:0006412	Biological Process	82%
Blast2go	structural constituent of ribosome	GO:0003735	Molecular Function	82%
Blast2go	RNA binding	GO:0003723	Molecular Function	82%
Blast2go	ribosome	GO:0005840	Cellular Component	82%
Blast2go	Golgi apparatus	GO:0005794	Cellular Component	82%
Blast2go	plastid	GO:0009536	Cellular Component	82%
Blast2go	mitochondrion	GO:0005739	Cellular Component	82%

Source	InterPros	Term	Type	Identity
Sma3	Protamine P1	IPR000221	-	-
Sma3	Ribosomal protein S5	IPR000851	-	-
Sma3	Ribosomal protein S5, C-terminal	IPR005324	-	-
Sma3	Protein of unknown function DUF688	IPR007789	-	-
Sma3	Ribosomal protein S5, N-terminal	IPR013810	-	-
Sma3	Double-stranded RNA-binding-like	IPR014720	-	-
Sma3	Ribosomal protein S5 domain 2-type fold, subgroup	IPR014721	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NV88

Fln msg: your sequence is shorter than subject: 109 - 328

Fln protein: MYMQRVFRNLHYVERYEEHTIPHAIQTKFKKTKIYLWPGAIGTGMRANSTIESVLYLAGYKNVKSKVIGSRHPHNTVKALFKALNMIETPKDIQEKFGRSVVESYLLK*

Protein Length: 110

Fln nts: AATGTATATGCAAAGAGTTTTCAGGAACCTTCATTATGTAGAAAGGTACGAGGAGCATACAATCCCTCATGCAATACAGACCAAATTTAAGAAAACCAAGATATACTTGTGGCCTGGTGCTATTGGAACAGGGATGAGGGCAAACAGTACAATTGAAAGTGTCCTCTATTTGGCTGGGTACAAGAATGTGAAATCTAAGGTGATTGGTTCACGACATCCACATAATACAGTAAAAGCTCTTTTCAAAGCTCTAAACATGATTGAGACTCCTAAGGATATCCAAGAGAAGTTTGGGCGTTCAGTGGTTGAATCATATTTGCTGAAATAG___TGCACCCCAATTTAGCTTGTGTGCACAGGCCGTATTTATTATTTGATCCCTTTGTGCCAGTTTTTTGTTTGTTCTTAGGCAGAGCCATTACTGGCAATGTATACTGGGGGCAATGAATAATTCTACATTTTAGTCCATTGCAGAGATCTTCTACTTCGGCAGTGCAGTC

Fln Alignment:

Contig1566___TIPHAIQTKFKKTKIYLWPGAIGTGMRANSTIESVLYLAGYKNVKSKVIGSRHPHNTVKALFKALNMIETPKDIQEKFG
A9NV88_________________TFPHRADGHYGAAKVMLRPATAGTGVIAGGAVRVVLELAGVENALGKQLGSDNPLNNARAVIDAVSQMRQFREVAEYRG

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
66	33	66			0.997452
67	33			66	0.997452
68		66		33	0.997452
69	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain