SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene1558

Length: 416 nt

UniGene Fasta

>biog3_v1.0_unigene1558
AAAGCACTACAGATGATTCGAGACATCCTGATGTATATGGATAGAACATTTGTCACCAATTCCAACAAGACCCCAGTCAATGAACTTGGACTGAATTTGTGGAGAGATCACATTGTCAAGTTACCAAATATTCGTGATAGGCTGCTAAATACCCTTCTTGACCTTGTATACACAGAGCGGACGGGTGAAATCATTGATCGAAGTTTAATGCGTAATGTCATTAAAATGTTGATGGATCTGGGTCCTTCTGTTTACCATGATGATTTTGAAAAGTCCTTTTTGGATGTTACGGCCAATTTTTACAGAATAGAGTCCCAGCAGTTTATGAATGTTGTGATTGTGGTGATTATATGAAGAAAGCAGAAAGAGGCTAAATGAAGAGATGGACAGAGTTTCAAATTACTTAGATCCAAAGA

Ace file of the UniGene biog3_v1.0_unigene1558

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15166	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	cullin 3B [Arabidopsis thaliana] sp\|Q9C9L0.1\|CUL3B_ARATH RecName: Full=Cullin-3B; Short=AtCUL3b gb\|AAG52544.1\|AC013289_11 putative cullin; 66460-68733 [Arabidopsis thaliana] gb\|AEE34961.1\| cullin 3B [Arabidopsis thaliana]	-	-	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	76%
Blast2go	protein	-	-	88%

Source	GOs	Term	Type	Identity
Blast2go	endosperm development	GO:0009960	Biological Process	88%
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	88%
Blast2go	protein binding	GO:0005515	Molecular Function	88%
Blast2go	SCF ubiquitin ligase complex	GO:0019005	Cellular Component	88%

Source	InterPros	Term	Type	Identity
Sma3	Cullin, N-terminal	IPR001373	-	-
Sma3	Small GTPase superfamily	IPR001806	-	-
Sma3	Winged helix-turn-helix transcription repressor DNA-binding	IPR011991	-	-
Sma3		IPR013753	-	-
Sma3	Cullin, conserved site	IPR016157	-	-
Sma3	Cullin homology	IPR016158	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LNS8

Fln msg: Overlapping hits, possible frame ERROR between 327 and 327, and overlapping frame ERROR between 368 and 353, Distance to subject end: 489 aas, your sequence is shorter than subject: 139 - 735

Fln protein: KALQMIRDILMYMDRTFVTNSNKTPVNELGLNLWRDHIVKLPNIRDRLLNTLLDLVYTERTGEIIDRSLMRNVIKMLMDLGPSVYHDDFEKSFLDVTANFYRIESQQFxxCCDCGDxxxxxxxxLNEEMDRVSNYLDPK

Protein Length: 140

Fln nts: AAAGCACTACAGATGATTCGAGACATCCTGATGTATATGGATAGAACATTTGTCACCAATTCCAACAAGACCCCAGTCAATGAACTTGGACTGAATTTGTGGAGAGATCACATTGTCAAGTTACCAAATATTCGTGATAGGCTGCTAAATACCCTTCTTGACCTTGTATACACAGAGCGGACGGGTGAAATCATTGATCGAAGTTTAATGCGTAATGTCATTAAAATGTTGATGGATCTGGGTCCTTCTGTTTACCATGATGATTTTGAAAAGTCCTTTTTGGATGTTACGGCCAATTTTTACAGAATAGAGTCCCAGCAGTTTxxxxxxTGTTGTGATTGTGGTGATTAxxxxxxxxxxxxxxxxxxxxxGCTAAATGAAGAGATGGACAGAGTTTCAAATTACTTAGATCCAAAGA

Fln Alignment:

Contig1558___KALQMIRDILMYMDRTFVTNSNKTPVNELGLNLWRDHIVKLPNIRDRLLNTLLDLVYTERTGEIIDRSLMRNVIKMLMDLGPSVYHDDFEKSFLDVTANFYRIESQQFMECCDCGDYMxxxxxRLNEEMDRVSNYLDPK
B8LNS8_________________KALQMIRDILMYMDRTYVTNSNKTPVHELGLNLWRDHIVRAAKIKDRLLNTLLELVRCERTGEVINRGLMRNIIKMLTELGPSVYHEDFEKPFVEEASTFYSIESQQFIECCDCGDYLxxxxxRLNEEIERVSHYLDSK

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
259	25		75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain