SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene1552

Length: 1621 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene1552

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene25487	65/65

Source	Descriptions	Term	Type	Identity
AutoFact	26S protease regulatory subunit 6B homolog n=13 Tax=Embryophyta RepID=PRS6B_ARATH	-	-	97%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	protein	-	-	95%

Source	ECs	Term	Type	e value	Identity
Blast2go	Adenosinetriphosphatase.	EC:3.6.1.3	-	0.0	95%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Purine metabolism	00230		0.0	95%

Source	GOs	Term	Type	Identity
Blast2go	blue light signaling pathway	GO:0009785	Biological Process	95%
Blast2go	phototropism	GO:0009638	Biological Process	95%
Blast2go	ATPase activity	GO:0016887	Molecular Function	95%
Blast2go	protein binding	GO:0005515	Molecular Function	95%
Blast2go	cell wall	GO:0005618	Cellular Component	95%
Blast2go	proteasome regulatory particle, base subcomplex	GO:0008540	Cellular Component	95%
Blast2go	membrane	GO:0016020	Cellular Component	95%

Source	InterPros	Term	Type	Identity
Sma3	26S proteasome subunit P45	IPR005937	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ATPase, AAA-type, core	IPR003959	-	-
Sma3	ATPase, AAA-type, conserved site	IPR003960	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A8Q6

Fln msg: your sequence is longer than subject: 420 - 214

Fln protein: MAASAVVLSPKSVVEGPTGKIEMSMPPPHPHSHSDMDEEDLYSRLKSLQRQMEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEITAICQEAGMHAVRKNRYVILPKDFEKGYRANVKKPDTDFDFYK*

Protein Length: 421

Fln nts: CGGGATATACCATTCAATTTGTTTATCTGAGGCAATTTCCTTTCGGTGAAGAAAGCCTCGGCTCTGTTCTGGTTTTTGCGAGGGAAAGGCAAGGTAAGGCGACA_-_ATGGCTGCATCGGCAGTGGTGCTAAGTCCGAAGTCGGTGGTCGAGGGTCCAACGGGCAAGATAGAGATGAGTATGCCTCCGCCCCATCCCCATTCTCATTCCGACATGGACGAAGAAGATCTGTACAGTCGATTGAAATCGTTACAGAGACAGATGGAGTTCATCGACATTCAAGAAGAATACGTGAAGGATGAGCAAAAAAATCTAAAGAGAGAACTGCTGAGAGCCCAGGAGGAGGTGAAGAGGATCCAGTCGGTGCCGCTGGTGATCGGGCAGTTCATGGAGATGGTTGACCAGAACAACGGAATAGTGGGTTCAACAACGGGATCGAACTACTATGTGAGGATTTTGAGCACAATCAACAGGGAGCTCCTGAAGCCCTCCGCCTCGGTAGCCCTCCACCGACATTCGAACGCCCTAGTGGACGTCCTCCCACCTGAGGCCGACTCCTCTATCTCACTCCTCTCCCAGTCCGAGAAACCGGACGTAACCTACAATGATATTGGGGGCTGTGACATACAGAAACAGGAGATTCGGGAAGCCGTGGAACTTCCACTCACACACCACGAGCTTTACAAGCAGATCGGGATAGACCCTCCTCGGGGTGTTCTTCTTTATGGCCCTCCAGGTACAGGGAAGACCATGCTTGCCAAGGCCGTCGCAAACCACACCACGGCTGCTTTCATTCGGGTTGTTGGCTCTGAGTTTGTTCAGAAGTATCTTGGAGAGGGGCCAAGGATGGTTCGTGATGTCTTTCGCCTTGCTAAAGAGAATGCACCTGCAATAATATTCATTGATGAGGTGGATGCAATTGCAACAGCACGGTTTGATGCTCAAACTGGAGCTGATAGGGAAGTTCAGAGGATCTTGATGGAGCTCTTAAATCAGATGGATGGTTTTGATCAGACCGTGAATGTGAAGGTGATCATGGCAACCAATAGAGCAGATACACTGGATCCCGCACTTCTGCGCCCTGGAAGACTTGATAGGAAAATCGAGTTTCCTCTTCCTGATAGGAGGCAGAAACGTCTTGTTTTCCAGGTTTGTACAGCAAAAATGAACCTCAGCGACGAGGTAGACCTTGAAGACTATGTATCTCGCCCTGATAAAATTAGTGCTGCAGAGATAACTGCAATTTGTCAAGAAGCTGGTATGCATGCAGTACGGAAAAACCGCTATGTTATTCTCCCAAAGGATTTTGAAAAGGGTTACAGAGCCAATGTTAAAAAACCAGACACAGACTTTGACTTTTACAAGTAA___TCAAACCTTTTCCGGCAACAGATATATATTTGTCAATTTCATCAATAGACATATCCTTCATGTTTTGGTAGAAGACTTGAAGGATGGTACTGTGCAGTAAAAATGAATATGGACGATGCCAATTTGTATTTTCTGAGTATTTTGTTACAGGATTAAAATTGAAATACCTTGCCGTTTATGTTTTATTCCAATGGGATATCGAGATACGTGAGGATGGAAATGCTATGTATATTATAAAATTTACATGATTTGATACT

Fln Alignment:

Contig1552___GKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEITAICQEAGMHAVRKNRYVILPKDFEKGYRANVKKPDTDFDFYK
D5A8Q6_________________GRPCLPRLSLTNTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEITAICQEAGMHAVRKNRYVILPKDFEKGYRANVKKPDTDFDFYK

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
1383	33	66			0.997452
1385			66	33	0.997452
1386	66		33		0.997452
1409	88			11	0.923564
1411	87			12	0.992554
1423	11	88			0.923564
1432		11	88		0.923564
1433	11		88		0.923564
1435	88			11	0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain