SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene1551

Length: 384 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene1551
ACAGGGTTTGAGCGAAGGATAGTGATTAAAATGACTCGGTAAATCTCTGAAAACATGCCTTTTGCTCCAACGATGGCACATGCTCGAGTCACTGCCCCTGCGGTCAAGTCCAGAAACCCAAGCAATTTCTTCTCATCAACGGGGCTTTCTCTCATGTTGCCTGGTGGTGGCGGTGGTGAAGGGCAAAACAGAAGTGGGCATGATGAGGATCAGGATTATGAGAGTAGCGAGAACATGGAAGGTGGATCTGGAGATGATATTGCAGACCTTGACCATCCTCGGAAGAAGCGTTACCACAGGCATACCCCTCAGCAAATCCAGGAAATGGAAGCACTTTTCAAGGAATTCCCTCATCCAGATGAAAAGCAAAGGCAACAACTCAGC

Ace file of the UniGene biog3_v1.0_unigene1551 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene22220	6/6

Source	Descriptions	Term	Type	e value	Identity
AutoFact	TPA_inf: class IV HD-Zip protein HDZ43 [Physcomitrella patens]	-	-	5.0e-32	74%
FL-Next	tr=Homeodomain protein HB2; Picea abies (Norway spruce) (Picea excelsa).	-	-	0.0	75%
Blast2go	homeobox-leucine zipper protein anthocyaninless 2-like	-	-	7.64948e-36	82%

Source	InterPros	Term	Type	Identity
Sma3	Helix-turn-helix motif	IPR000047	-	-
Sma3	Homeodomain	IPR001356	-	-
Sma3	Lipid-binding START	IPR002913	-	-
Sma3		IPR012287	-	-
Sma3	Homeobox, conserved site	IPR017970	-	-
Sma3	Tubulin, conserved site	IPR017975	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: Q8S555

Fln msg: Distance to subject end: 648 aas, your sequence is shorter than subject: 110 - 708

Fln protein: MPFAPTMAHARVTAPAVKSRNPSNFFSSTGLSLMLPGGGGGEGQNRSGHDEDQDYESSENMEGGSGDDIADLDHPRKKRYHRHTPQQIQEMEALFKEFPHPDEKQRQQLS

Protein Length: 111

Fln nts: ACAGGGTTTGAGCGAAGGATAGTGATTAAAATGACTCGGTAAATCTCTGAAAAC_-_ATGCCTTTTGCTCCAACGATGGCACATGCTCGAGTCACTGCCCCTGCGGTCAAGTCCAGAAACCCAAGCAATTTCTTCTCATCAACGGGGCTTTCTCTCATGTTGCCTGGTGGTGGCGGTGGTGAAGGGCAAAACAGAAGTGGGCATGATGAGGATCAGGATTATGAGAGTAGCGAGAACATGGAAGGTGGATCTGGAGATGATATTGCAGACCTTGACCATCCTCGGAAGAAGCGTTACCACAGGCATACCCCTCAGCAAATCCAGGAAATGGAAGCACTTTTCAAGGAATTCCCTCATCCAGATGAAAAGCAAAGGCAACAACTCAGC

Fln Alignment:

Contig1551___NMEGGSGDDIADLDHP-RKKRYHRHTPQQIQEMEALFKEFPHPDEKQRQQLS
Q8S555_________________HMDGGSGDDQDAADNPPRKKRYHRHTPQQIQELEALFKECPHPDEKQRLDIS

SNPs (tot: 4)

Position	A %	G %	T %	Probability
167	20		80	0.995493
168	80		20	0.995493
169	80	20		0.995493
264	25		25	0.995533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain