SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene1548

Length: 532 nt

UniGene Fasta

>biog3_v1.0_unigene1548
GATGCTGAAGTATGCAAGAGAAGATACTCATTATCTTTTATATATCCATGACGTAATGCAGCAGAGATTAAAGTCCATGCCCTCTGAGAGCGGGGAGGCTCCACTAATGGAGGTTTATAAACGCAGCCGTGATATATGCTTGCAGATTTATGAAAAAGAACTTCTGACAGAAACGTCTTATTTACATGTTTATGGATTACAGGATGGAAACCTCAGTCCGGAGCAGCTTTCTGTTGCCGCTGGCTTATATGAATGGAGGGATAAGATAGCTCGTGTGGAAGATGAAAGTACTGGCTATATATTGCCAAACAAAATACTACTACAAATTGCTAAGAGGATCCCTCGCACCACCAATGACCTTCGTGCATTTGTCAACGGCAGGCATCCTTTTGTCGAGCAGAATCTTGCTGCTGTACTTGATGTTATAAAACAAGCCAGGGAAATGAGAAATAAGGCAGTTGAAATTTCTCCAAACCCACTGGAACAAGTTTCTAGGAAGGGAGCAGATGGGCTAAAAGAGATATCAGACATT

Ace file of the UniGene biog3_v1.0_unigene1548

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9641	7/7

Source	Descriptions	Term	Type	Identity
AutoFact	pfam01612, DNA_pol_A_exo1, 3'-5' exonuclease	-	-	38%
FL-Next	tr=3'-5' exonuclease, putative; Ricinus communis (Castor bean).	-	-	58%
Blast2go	rrp6-like protein 1	-	-	73%

Source	GOs	Term	Type	Identity
Blast2go	nucleobase-containing compound metabolic process	GO:0006139	Biological Process	73%
Blast2go	nucleic acid binding	GO:0003676	Molecular Function	73%
Blast2go	3'-5' exonuclease activity	GO:0008408	Molecular Function	73%
Blast2go	nucleotide binding	GO:0000166	Molecular Function	73%
Blast2go	intracellular	GO:0005622	Cellular Component	73%

Source	InterPros	Term	Type	e value	Identity
Sma3	Helicase/RNase D C-terminal, HRDC domain	IPR002121	-	0.0	-
Sma3	3'-5' exonuclease domain	IPR002562	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9SI83

Fln msg: Distance to subject end: 306 aas, your sequence is shorter than subject: 177 - 857

Fln protein: MLKYAREDTHYLLYIHDVMQQRLKSMPSESGEAPLMEVYKRSRDICLQIYEKELLTETSYLHVYGLQDGNLSPEQLSVAAGLYEWRDKIARVEDESTGYILPNKILLQIAKRIPRTTNDLRAFVNGRHPFVEQNLAAVLDVIKQAREMRNKAVEISPNPLEQVSRKGADGLKEISDI

Protein Length: 178

Fln nts: GATGCTGAAGTATGCAAGAGAAGATACTCATTATCTTTTATATATCCATGACGTAATGCAGCAGAGATTAAAGTCCATGCCCTCTGAGAGCGGGGAGGCTCCACTAATGGAGGTTTATAAACGCAGCCGTGATATATGCTTGCAGATTTATGAAAAAGAACTTCTGACAGAAACGTCTTATTTACATGTTTATGGATTACAGGATGGAAACCTCAGTCCGGAGCAGCTTTCTGTTGCCGCTGGCTTATATGAATGGAGGGATAAGATAGCTCGTGTGGAAGATGAAAGTACTGGCTATATATTGCCAAACAAAATACTACTACAAATTGCTAAGAGGATCCCTCGCACCACCAATGACCTTCGTGCATTTGTCAACGGCAGGCATCCTTTTGTCGAGCAGAATCTTGCTGCTGTACTTGATGTTATAAAACAAGCCAGGGAAATGAGAAATAAGGCAGTTGAAATTTCTCCAAACCCACTGGAACAAGTTTCTAGGAAGGGAGCAGATGGGCTAAAAGAGATATCAGACATT

Fln Alignment:

Contig1548___MLKYAREDTHYLLYIHDVMQQRLKSMPSES--GEAPLMEVYKRSRDICLQIYEKELLTETSYLHVYGLQDGNLSPEQLSVAAGLYEWRDKIARVEDESTGYILPNKILLQIAKRIPRTTNDLRAFVNGRHPFVEQNLAAVLDVIKQAREMRNKA
B9SI83_________________MLRYGREDTHYLLYIYDLMRIMLLSMPNETENSNSPLAEVYKRSYDVCMQLYEKELLTESSYLHIYGLQTAGFNAQQLAIVAGLCEWRDVIARTEDESTGFILPNKTLLEIAKQMPVTPQKLRRALKSKHPYIERNLGSVVNVVRHA--MQNAA

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
110			50	50	1.0
305	25	75			0.996473
308	75			25	0.996473
309	75			25	0.996473
399	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain